Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52010 344 / 7e-118 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G12240 169 / 3e-50 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024807 [exp] 475 / 7e-169 AT5G52010 456 / 6e-160 C2H2-like zinc finger protein (.1) Lus10032208 [exp] 160 / 2e-46 AT4G12240 402 / 5e-140 zinc finger (C2H2 type) family protein (.1) Lus10024570 [exp] 91 / 2e-21 AT4G12240 234 / 3e-76 zinc finger (C2H2 type) family protein (.1) Lus10018729 [exp] 78 / 6e-17 AT5G52010 136 / 2e-38 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025100 [exp] 380 / 8e-132 AT5G52010 441 / 5e-154 C2H2-like zinc finger protein (.1) Potri.003G114700 [exp] 166 / 4e-48 AT4G12240 424 / 5e-148 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018728 pacid=23176215 polypeptide=Lus10018728 locus=Lus10018728.g ID=Lus10018728.BGIv1.0 annot-version=v1.0 ATGGCGGAGAATTTCGGAGAGGTAATCGAGATGTCTGCTTACGCCAACCGTCACGCCTTCGTCCACCTCCCACAGTGGGTGGTGGAGGACCGGCGGGAGA GGAGGCAGCAGGACATCCTGGAGCGGAAGGGAATCGTCTCATCAACTGAACCCTATGTATGCGGAGTATGCGGCAGGAAATGCAAGACCAATTTGGACCT GAAGAAGCACTTCAGGCAGCTCCACGAGCGTGAGAGGCAGAAGAAGGTGAACCGAATGAAATCCCTAAAGGGAAAGAAACGGCAGAAGTACAAAGAGAGG TTCATATCAGGGAATGACAAGTATAACAACGAAGCTAGGAGATTGTTGACTCCGAAAGCAGGGTACGGGCTTGCTGCGGAGCTGAGGAGAGCAGGGGTGT ATGTTAAGATGGTGGAAGATAAACCTCAAGCTGCGGATTGGGCAGTGAAGAAACAAATAGAGCATTCGATGAGTAGGGGGGTTGATTGGGTAGTTCTAGT GTCGGATGATTCAGATTTCAGAGGGATATTGATGAGAGCTAGGGAGTCTAGGTTGGGGACGGTGGTGGTTGGTGATAGGGATAGAGCATTGGGAAGGCAC GCTGATTTGTGGGTTCCCTGGATTGGGGTTGAGAATGGAGATGTAAGTGAGCAAGATTTGGTGCCTAAGAGAAGGACAAGTGAGGATTCGGATGATGATG ATGATGAGTGTGATTCGGTTAGTCATTTTGCGGAAGAAGATGTTGGGTATTATGAGTGGAGTGATGTGGATACTGTTGTTGAGGAGCTTACAGGCGTGAG GAGGATTTCAATGTTCTCGGAAGAAGAGGGTGACTATGATCAGCTGTTGGATAGTGACGATGAAGATGATAGCTTTTTGCATCACATTTGA
AA sequence Show only first row Show all	>Lus10018728 pacid=23176215 polypeptide=Lus10018728 locus=Lus10018728.g ID=Lus10018728.BGIv1.0 annot-version=v1.0 MAENFGEVIEMSAYANRHAFVHLPQWVVEDRRERRQQDILERKGIVSSTEPYVCGVCGRKCKTNLDLKKHFRQLHERERQKKVNRMKSLKGKKRQKYKER FISGNDKYNNEARRLLTPKAGYGLAAELRRAGVYVKMVEDKPQAADWAVKKQIEHSMSRGVDWVVLVSDDSDFRGILMRARESRLGTVVVGDRDRALGRH ADLWVPWIGVENGDVSEQDLVPKRRTSEDSDDDDDECDSVSHFAEEDVGYYEWSDVDTVVEELTGVRRISMFSEEEGDYDQLLDSDDEDDSFLHHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018728 [exp]	0	1
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	2.0	0.8792
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	4.5	0.8737
AT2G22360			DNAJ heat shock family protein...		Lus10025742 [exp]	6.6	0.8443
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	7.2	0.8550
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10026458 [exp]	7.5	0.8848
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10016803 [exp]	15.1	0.8507
AT4G13220			unknown protein		Lus10022819 [exp]	15.2	0.8759
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	19.4	0.8787
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	21.2	0.8690
AT2G42190			unknown protein		Lus10031232 [exp]	22.0	0.8434

Compare expression of checked genes

Lus10018728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.