Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52010 123 / 9e-34 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G12240 68 / 2e-13 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024807 [exp] 247 / 4e-81 AT5G52010 456 / 6e-160 C2H2-like zinc finger protein (.1) Lus10018728 [exp] 78 / 3e-17 AT5G52010 375 / 5e-130 C2H2-like zinc finger protein (.1) Lus10032208 [exp] 65 / 2e-12 AT4G12240 402 / 5e-140 zinc finger (C2H2 type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025100 [exp] 140 / 7e-40 AT5G52010 441 / 5e-154 C2H2-like zinc finger protein (.1) Potri.003G114700 [exp] 73 / 4e-15 AT4G12240 424 / 5e-148 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018729 pacid=23176266 polypeptide=Lus10018729 locus=Lus10018729.g ID=Lus10018729.BGIv1.0 annot-version=v1.0 ATGCCTCCGCTTCTCACCTCCGTCGACACCTCTCATCTGCCGAAACCACCGATTGTCTTCTCACAAACCTCTCTCCATTCCTCTCCTTCCTGCGCTCCCG CAAATCCAGACCGTCTATTCAAATTCAACGGACTGATTCTTCAGAGTTCAAGGTCTTATCTCCGCCGCAGATGCTCGATAACCGCCTGCCACGCTTCCGC CTCCACCTCTGCCGCCGCGGAGTCAGAGATCAACATGGTAAAGAACAAGCAAGGAACGTACACCGCCAGGCAGAACAAAGTGGTGGTTCTGTGGGATCTC GACAACAAGCCCCCGCGTGGGCCGCCTTATAACGCGGCTTTGGCGCTGAAGGAAATGGCGGAGAATTTCGGAGAGGTAATCGAGATGTCTGCTTACGCCA ACCGTCACGCCTTCGTCCACCTCCCACAGTGGGTGGTGGAGGACCGGCGGGAGAGGAACACAGAAAAAAAAAATGGAAAAAAAAAAGAAAGGAACGTACC CCGCCAGGCAGAACAAAGTGGTGGTTCTGTGGGATCTCGACAACAAGCCCCCGCGTGGGCCGCCTTATAA
AA sequence Show only first row Show all	>Lus10018729 pacid=23176266 polypeptide=Lus10018729 locus=Lus10018729.g ID=Lus10018729.BGIv1.0 annot-version=v1.0 MPPLLTSVDTSHLPKPPIVFSQTSLHSSPSCAPANPDRLFKFNGLILQSSRSYLRRRCSITACHASASTSAAAESEINMVKNKQGTYTARQNKVVVLWDL DNKPPRGPPYNAALALKEMAENFGEVIEMSAYANRHAFVHLPQWVVEDRRERNTEKKNGKKKERNVPRQAEQSGGSVGSRQQAPAWAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018729 [exp]	0	1
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	2.8	0.9168
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	3.9	0.8897
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	8.6	0.9039
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	10.2	0.8876
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	16.9	0.8883
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	21.6	0.8601
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	27.7	0.8424
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	29.5	0.8844
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	29.5	0.8738
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	30.0	0.8786

Compare expression of checked genes

Lus10018729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.