Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06536 158 / 2e-47 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 41 / 0.0008 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010045 [exp] 304 / 3e-100 AT4G06536 149 / 6e-43 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10024806 [exp] 263 / 2e-87 AT4G06534 72 / 2e-14 unknown protein Lus10010241 [exp] 244 / 7e-79 AT4G06536 140 / 1e-40 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10009445 [exp] 47 / 9e-06 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 42 / 0.0003 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123800 [exp] 329 / 3e-110 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.014G025000 [exp] 328 / 7e-110 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10018730 pacid=23176242 polypeptide=Lus10018730 locus=Lus10018730.g ID=Lus10018730.BGIv1.0 annot-version=v1.0 ATGCAGAGGATACGATTAAATTCAGGGCTGAAGAGAGTTAGCGTCAGCAATCCTTCGACATCGGCCGCCTCCGTTATCAAAACCGCTCTCCCCTTACCCG GCCCGCCGTTGGGGAACAACATTAACTCGGCGTTTCCTCAGGAAGCCTACTTCGAGATCACGATTTTGTACTCCCGCGGCGGAGGAGGAGAGGAGTGCCA TCAGAATAGTCGTAGGTCTTCTTCGGCTGCGGCGGCGGCGGCTGGTGGGAAAGGCATAAATGGGGAAGGGGAGAAAATAAAACTAATTCAGGAAATTCCA AATCCCAATTCCAACTCGGCGGCTTTGATGCACGTCAGCAGCAGCCATAGGATCAATAGGATTGAAGAGCTGAAGGGCAGTGGTAAAGATGATAGCAGTA AGAGGAGTGAAGCTGTTTCGGTGGCGGTGGGGCTCTCAGTTGGTAGCGGCTGTCCCCCGTTCAAGCTCCCTGGAAGCTACCAGGGTTCCATTGGCTTCAA TTCCACTGGCTCTGTCTATCTTGATGGTCTGAAGCTGGTGTTTGAAACGGAGGAATCATCAGACTGGGCAAAGGCAGAGAGAGTAATCGGGTGCGGGTTC GAGCCGAGGCAGAAGAAAGTGTTCTTCACAGTAGACGGAGAAATGGTACACATAATTCACTGCAAGGCGGACGAGTTCGGGACACCATTGTACCCGACAA TTGCGGCCAATAGTGACACGGTGGTGCTTGTCAACTTGGGGCAGAGCGCTTTCAGTTACGCTCCTGCGAATAATCAGAGAACCCCTAATCCTTGCTTCAT CGGACCGATGATGAAGTCTCCGGCTTTGGGGTATGAGGACAGTAGAGAGCTGTTCTCGATGGGGAGGATTGATTCTCAGTGGCTGGATAGAAGCGCCACT ACTGCCATGTACCCCCGCCACCACCACAACAACAACGACGACGATAGTAACTTGGCGGCAGAGGAGGAGGAATTTGACGAGGAATCTGATGCTGATTTGT TTGAGATTGTGCTGGATAGCAGCAGTGGACGCTCTCCCAACATTGTGCTGTAG
AA sequence Show only first row Show all	>Lus10018730 pacid=23176242 polypeptide=Lus10018730 locus=Lus10018730.g ID=Lus10018730.BGIv1.0 annot-version=v1.0 MQRIRLNSGLKRVSVSNPSTSAASVIKTALPLPGPPLGNNINSAFPQEAYFEITILYSRGGGGEECHQNSRRSSSAAAAAAGGKGINGEGEKIKLIQEIP NPNSNSAALMHVSSSHRINRIEELKGSGKDDSSKRSEAVSVAVGLSVGSGCPPFKLPGSYQGSIGFNSTGSVYLDGLKLVFETEESSDWAKAERVIGCGF EPRQKKVFFTVDGEMVHIIHCKADEFGTPLYPTIAANSDTVVLVNLGQSAFSYAPANNQRTPNPCFIGPMMKSPALGYEDSRELFSMGRIDSQWLDRSAT TAMYPRHHHNNNDDDSNLAAEEEEFDEESDADLFEIVLDSSSGRSPNIVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	0	1
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	2.0	0.9860
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	3.5	0.9852
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	4.0	0.9880
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	4.9	0.9826
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	6.3	0.9852
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	6.5	0.9862
AT4G02920			unknown protein		Lus10008160 [exp]	6.5	0.9843
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	7.3	0.9838
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	9.3	0.9861
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10017950 [exp]	9.8	0.9694

Compare expression of checked genes

Lus10018730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.