Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47820 1546 / 0 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 1216 / 0 KICP-02 ATP binding microtubule motor family protein (.1) AT5G60930 877 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 241 / 9e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 240 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 234 / 2e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 232 / 9e-63 ATP binding microtubule motor family protein (.1) AT3G44050 229 / 2e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 227 / 3e-60 POK2 phragmoplast orienting kinesin 2 (.1) AT3G63480 211 / 3e-59 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024805 [exp] 2056 / 0 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 1734 / 0 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000392 [exp] 915 / 0 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000762 [exp] 782 / 0 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018120 [exp] 243 / 3e-66 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 242 / 6e-66 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 242 / 9e-66 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 241 / 1e-65 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 241 / 4e-65 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024700 [exp] 1723 / 0 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 1714 / 0 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 1434 / 0 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G106000 [exp] 940 / 0 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 878 / 0 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 246 / 3e-67 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 243 / 2e-66 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 237 / 2e-64 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 233 / 5e-63 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 231 / 1e-62 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10018731 pacid=23176176 polypeptide=Lus10018731 locus=Lus10018731.g ID=Lus10018731.BGIv1.0 annot-version=v1.0 ATGGATACTCCTCCACCGTCTCCCGGCGCCGGTGCTGGGGGAGAGAATTGCTGTGTAAAAGTAGCCGTACATGTAAGACCCCTAATTGCCGACGAAAGAG CTCAAGGCTGTAAAGATTGCGTCACTGTCGTCCCTGGAAAACCTCAGGTACAAATAGGGACGCACTCGTTTACCTTCGATCATGTATATGGGAGCACGGC TTCACCTTCCTCTGCTATGTTTGACGAATGTGTTTCTCCACTTGTTGATGGCTTGTTCCAAGGTTACAATGCAACAGTTCTCGCCTATGGTCAGACAGGG TCAGGAAAGACGTATACAATGGGTACTGGTTTCAAAGATGGTTATCAAGCTGGAATAATTCCTCAAGTTATGAGTGTTCTCTTTGGAAAGATCGAAACTT TGAAGCATCAAACTGAATTCCAGCTTCATGTTTCTTTCATTGAGATTCTGAAAGAGGAAGTGCGAGACTTGCTTGATTCCGCTTTACTGAACAAAATGGA ATCTGGAAATGGGAATGCTGGCAAAGTGCACGTTCCTGGAAAACCGCCGATACAGATTCGTGAATCGTCAAATGGTGTGATTACATTAGCAGGATCCACG GAGGTCAGTGTAAGCAGTTTTAAAGAAATGGCTGCTTACCTAGAGCAGGGATCAATGAGCAGGGCAACAGGGAGTACAAACATGAACAACCAATCTAGTC GCTCCCATGCCATTTTCACCATCACCCTAGAGCAGATACACAAACTCAATCCGATGTTTCCTGGAGATGGATCCCCTAATGACAGCATGAATGATGAGTA TCTTTGTGCTAAATTGCATTTAGTAGATCTTGCTGGATCAGAGAGGGCTAAGAGGACTGGTTCTGATGGTTTACGTTTCAAGGAAGGCATTCACATAAAC AAGGGCCTTCTGGCACTTGGCAATGTTATCAGTGCACTTGGCGATGAGAAAAAACGTAAAGAAGGTCTTCATGTTCCTTATCGGGACAGTAAATTGACCC GCCTTTTGCAGGCGAGTATCCATACACTAGGCATCCTGGTTTCTCTTCGTGCTTTCGACTCACTCGGGGGTAACAGCAGAACCGTCATGATAGCTTGCAT TAGCCCTGCAGATATAAATGCTGAGGAAACCCTTAATACTCTGAAATATGCAAATCGTGCCCGAAATATTCAAAACAAGCCTGTTGTCAATAGAGATCCT ATGTCCAGTGAGATGCTCAAAATGCGACAACAACTCGAGTATCTTCAGGCAGAACTCTGTGCCCGTGGAGGATCCTCACCTGATGAAGTTCAGGTTCTCA AGGACAGAATTGCTTGGCTAGAAGCTACGAATGAGGACCTTTGTAGAAAGCTTCATGAATACCGCAGCAGGTGTGCTCCTGGGGACCTGCGGGACATAGA TGCTCAAGATAGTAGTATCTGTTCAATAAAAGGTGAAGCAGTTAGAAGGAGCTTACATAGTCTAGAGGCATCTGACTATCAAATGGTTGAAACAATATCA GCTGATACAAAGGAAATTGATGAAGAAGTAGCAAAAGAATGGGAGCACACACTTCTCCAGAACACACTAGACAAGGAGCTACATGAGTTAAACAGACGCT TGGAAGAGAAAGAGTCAGAGATGAAACTTGTCGGAGGATCTGACACTGCAGCACTTAAGCAACACTTCGGCAAGAAACTCATGGAATTAGAGGATGAAAA AAGAGTTGTGCAGCAAGAACGTGATCGTTTGTTAGCCGAAATTGAAAACCTATCGGCTAACTCAGATGGGCAGACACAGAAATTGCAAGATGTGCATGCC CAGAAGCTGAAGACATTAGAAGGGCAGATTCTGGATCTTAAGAAGAAACAAGAGAACCAAGTTCAGCTTTTGAAGCAAAAGCAAAAAAGTGATGACGCGG CAAGGAAATTGCAAGAAGAAATACAATCTATAAAAGCCCAAAAGGTTCAATTGCAACACAGAATGAAGCATGAGGCAGAACAATTTCGACAATGGAAGGC CTCTAGAGAAAAGGAATTGCTTCAGTTACGCAAAGAGGGGAGAAGAAACGAATACGAAAGGCACAAATTACAAGCCATAAACCAGCGCCAAAAAATGGTT CTGCAGAGAAAAACAGAAGAAGCTGCTGTTGCTACCAAAAGGTTGAAGGAGTTACTTGAAGGTCGAAAATCTTCACCACGGGATAACACAGGACTTGCGA ATGGACATGTAGCCAATGGGCAGAGTAATGAGAAATCCTTGCAGCGATGGCTTGAGCATGAGCTAGAAGTGATGGTGAATGTCCATGAAGTTCGGTTTGA ATATGAGAAGCAGAGTCAAGTGAGAGCTGCTCTAGGGGAAGAACTTGCTGTGTTGAAGGAAGTGGATGAGCTAGCTTCAAAAGGATTAAGCCTTCCAAAG GGGAAGAATGGATTTTCCAGGGCTTCTTCCATGTCACCAAATGCCAGAATGGCTAGAATAGCATCGCTGGAGAACATGTTAAGCATATCATCTAACTCGC TTGTGGCAATGGCTTCACAACTTTCAGAGGCGGAGGAACGTGAACGTGGTTTGACTACCCGTGGGCGTTGGAACCAATTGCGCTCCATGGGAGATGCAAA GAACTTGCTTCAGTATATGTTTAACTCTCTCGGAGATGCAAGGTGCCAATGCTGGGAGAAGGATATGGAAATCAAGGAAATGAAGGAACAATTCAAAGAA CTTATGAACCTATTACGACAAAGTGAGACTCGAAGAAAGGAAGTCGAGAAGGAGCTGATACATAGAGAGGGAGCTATTGCTATTGCCTTGGCTACAGCAG CTTCGGCTGGTCATGAACAAGGGAACTCACCCAATTCACTAAAACACAGTGCTGATGAAATGATGAGCAGTCCCTTGTCTCCGGTGTCTGTGCCAGCACA GAAGCAGCTAAAATATACGCCAGGAATCGTCAATGCCCCAGTCACAGAAGCTGCGGCATTTATAGATCAGTCAAGAAAAATGGTGCCACTTGGGGACGCA ACAATGAGAAAATTAGCAATTGCAGGACAAAATGGAAAGCTATGGAGATGGAAGAGAAGCCACCACCAGTGGCTTTTGCAATTTAAATGGAAATGGCAGA AGCCATGGAGGATCTCTGAGACGATCAGGCTTAACGATGGAACAATTTCAAGGACAAGGCCTCGTGTACAGTATCGAGCACGAGTGTCATGA
AA sequence Show only first row Show all	>Lus10018731 pacid=23176176 polypeptide=Lus10018731 locus=Lus10018731.g ID=Lus10018731.BGIv1.0 annot-version=v1.0 MDTPPPSPGAGAGGENCCVKVAVHVRPLIADERAQGCKDCVTVVPGKPQVQIGTHSFTFDHVYGSTASPSSAMFDECVSPLVDGLFQGYNATVLAYGQTG SGKTYTMGTGFKDGYQAGIIPQVMSVLFGKIETLKHQTEFQLHVSFIEILKEEVRDLLDSALLNKMESGNGNAGKVHVPGKPPIQIRESSNGVITLAGST EVSVSSFKEMAAYLEQGSMSRATGSTNMNNQSSRSHAIFTITLEQIHKLNPMFPGDGSPNDSMNDEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGIHIN KGLLALGNVISALGDEKKRKEGLHVPYRDSKLTRLLQASIHTLGILVSLRAFDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDP MSSEMLKMRQQLEYLQAELCARGGSSPDEVQVLKDRIAWLEATNEDLCRKLHEYRSRCAPGDLRDIDAQDSSICSIKGEAVRRSLHSLEASDYQMVETIS ADTKEIDEEVAKEWEHTLLQNTLDKELHELNRRLEEKESEMKLVGGSDTAALKQHFGKKLMELEDEKRVVQQERDRLLAEIENLSANSDGQTQKLQDVHA QKLKTLEGQILDLKKKQENQVQLLKQKQKSDDAARKLQEEIQSIKAQKVQLQHRMKHEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAINQRQKMV LQRKTEEAAVATKRLKELLEGRKSSPRDNTGLANGHVANGQSNEKSLQRWLEHELEVMVNVHEVRFEYEKQSQVRAALGEELAVLKEVDELASKGLSLPK GKNGFSRASSMSPNARMARIASLENMLSISSNSLVAMASQLSEAEERERGLTTRGRWNQLRSMGDAKNLLQYMFNSLGDARCQCWEKDMEIKEMKEQFKE LMNLLRQSETRRKEVEKELIHREGAIAIALATAASAGHEQGNSPNSLKHSADEMMSSPLSPVSVPAQKQLKYTPGIVNAPVTEAAAFIDQSRKMVPLGDA TMRKLAIAGQNGKLWRWKRSHHQWLLQFKWKWQKPWRISETIRLNDGTISRTRPRVQYRARVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	0	1
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	1.0	0.9655
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	1.7	0.8997
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	3.2	0.9013
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	3.5	0.8600
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	4.9	0.8706
AT2G40820			unknown protein		Lus10027293 [exp]	5.9	0.8635
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	10.6	0.8509
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	12.4	0.8587
					Lus10020368 [exp]	12.5	0.8513
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	14.0	0.8338

Compare expression of checked genes

Lus10018731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.