Plant FIBer expression Database

Lus10018732 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47830 174 / 4e-56 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024804
[exp]
308 / 7e-106 AT5G47830 174 / 6e-53 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G123400
[exp]
183 / 1e-59 AT5G47830 187 / 4e-61 unknown protein
Potri.014G024500
[exp]
180 / 1e-58 AT5G47830 190 / 2e-62 unknown protein
PFAM info
Representative CDS sequence
>Lus10018732 pacid=23176237 polypeptide=Lus10018732 locus=Lus10018732.g ID=Lus10018732.BGIv1.0 annot-version=v1.0
ATGCCAGATGCCATGGACACGGAAATGACCGTCACGGCGGCGGTTGTCCCCGGCGACGTCCGAGAGCTACTCGCATTGGCGCGACAACTAATCGATCAAG
GCAAACCATCCCAGGCTCTTCAAATGGTGATGACAGCCGCCCGGAATCAAGGTGGAGATGAAGCAATGTTCCAGTCTTTGACTCGTGCTCGTGAACTGTA
CCGAATGAGACTACAAGAAAGCAGCAACTCCGTTGATCAGCTGGCAACTTTGTTTGCAGAATGTGCCATTGCTGGAACAGAGTCTCCCAAACCTCAAGTG
CAATGTAACGCATCTGGGGTGGTGACACCGAATATTTATGAACGCTCCATACTTGCAGAAACTGGCAGAAACCAGCTTGTTTTGGATGCATTTGCGGATG
GTAGCAGTTTCATCTGCTTACAGTGTGGTGGTCTTGTGAGCGTCAATCGCAGAGATGAGCACTTCACCTACTGGTGTATCAACTGA
AA sequence
>Lus10018732 pacid=23176237 polypeptide=Lus10018732 locus=Lus10018732.g ID=Lus10018732.BGIv1.0 annot-version=v1.0
MPDAMDTEMTVTAAVVPGDVRELLALARQLIDQGKPSQALQMVMTAARNQGGDEAMFQSLTRARELYRMRLQESSNSVDQLATLFAECAIAGTESPKPQV
QCNASGVVTPNIYERSILAETGRNQLVLDAFADGSSFICLQCGGLVSVNRRDEHFTYWCIN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G47830 unknown protein Lus10018732
[exp]
0 1
AT2G39220 PLP6, PLAIIB ,P... PATATIN-like protein 6 (.1) Lus10036212
[exp]
1.0 0.8474
AT4G25270 OTP70 organelle transcript processin... Lus10031134
[exp]
5.5 0.8111
AT5G41040 HXXXD-type acyl-transferase fa... Lus10035189
[exp]
6.0 0.8003
Lus10021242
[exp]
6.3 0.8444
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Lus10000963
[exp]
9.8 0.8170
AT4G37650 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM... Lus10025200
[exp]
12.2 0.8172
AT2G30130 AS2 PCK1, LBD12, AS... PEACOCK 1, Lateral organ bound... Lus10017431
[exp]
12.8 0.8150
AT1G33760 AP2_ERF Integrase-type DNA-binding sup... Lus10006172
[exp]
13.7 0.7823
AT1G06475 unknown protein Lus10015269
[exp]
15.0 0.8093
AT4G12010 Disease resistance protein (TI... Lus10006789
[exp]
15.9 0.8080

Lus10018732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.