Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43020 622 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 559 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 519 / 4e-177 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 317 / 6e-99 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G05160 276 / 9e-84 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G08680 269 / 6e-81 Leucine-rich repeat protein kinase family protein (.1.2) AT1G60630 268 / 2e-80 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 264 / 7e-79 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 258 / 1e-76 RLK902 receptor-like kinase 902 (.1) AT5G24100 253 / 5e-75 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024803 [exp] 1076 / 0 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036426 [exp] 590 / 0 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041101 [exp] 587 / 0 AT5G67200 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 410 / 2e-134 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029075 [exp] 409 / 3e-134 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 311 / 8e-97 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017178 [exp] 288 / 1e-87 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021383 [exp] 286 / 3e-87 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 266 / 6e-80 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024400 [exp] 689 / 0 AT5G43020 628 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G046900 [exp] 618 / 0 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G141200 [exp] 592 / 0 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 410 / 1e-134 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G144900 [exp] 407 / 9e-134 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 306 / 3e-95 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 306 / 6e-95 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 297 / 1e-91 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 286 / 9e-87 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G035500 [exp] 268 / 3e-80 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10018733 pacid=23176217 polypeptide=Lus10018733 locus=Lus10018733.g ID=Lus10018733.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGATGCTACTTGTGCTGCTTCTTCTACTCTCCGTCTCACTCGCTTCTTCACTTTCCGACGACGCCCAATCTCTTCTCTCTTTCAAATCCA AGGCTGATTTGAACGGCCTCCTCCACTACCCTCACAAATCTACTCCCAACTTCTGCCGTCTCTGGCAAGGCGTCGAATGCTCCTCCGGAAACAGAGTAGT TCGCCTCGTCCTTCATGACCTACCTCTCGCCGGCGTCTTCCCTCCCGACACTCTGACCCGGCTTGACCAGCTCCGGGTCCTCTCCCTCCAGAACAACTCC CTCACCGGACCTATCCCTGACCTCTCCTCCCTCGTCAATCTCAAATCCCTTTTCCTCGACCATAACTACTTCTCCGGTTCATTCCCTCCTTCCCTCGCTT CTCTCCACCGTCTCCGCACTCTCGATCTCTCCTTCAATAGTCTCTCCGGTCCTTTGCCTTCTTGGCTCACTTCCCTCGACCGCCTCAACACTCTCCGCCT CGAGTGGAATCGCTTTAACGAATCCATCCCGCCGCTCAACCAGTCTTCACTCGACAGCTTCAACGTCTCTCACAACAACCTCACCGGCGCCATTCCGGTA ACTCCTACTTTTCTCCGCCTCCAGATCTCGTCCTTCTCTACCAACCCTAACCTCTGCGGCAAGATCGTACACAAGGAATGCCGTCCTGGATCCCCGTTCT TCGGCTTTCCGTCGTCGTCGTCGGCACTAGCAGCTCCACCGCCATCGTCCGTACAACTCGGCCAATCAGCAGAGCTCCACGGCGTCGATCTATCGCATCC GAATCACAAGAGAAAATCCGTGATAATCGGATTCTCCGTAGCGGTTTTTGCTCTCATCGTGTCGCTGCTCCTCTGTTTCGTAATGGCGATGAGGGGAAAA CAGAAGAAGAAGAAATCATCCAATAAAGGCATCGATCTGTCTCTTGACCACACCAACGACGGAGGAGATGCGGTGGTGATGCAGATAGACGAGAAGGAAA ATGAGTTGGAAGAGAAAGTGAAGAAGGCGCAGCAAGGGTTGCAGCAGATGGGTAAGAGTGGGAACTTGATGTTCTGCGCAGGGGAAGCGCAGGTTTACAC GCTGGATCAGCTGATGAGAGCTTCTGCTGAGCTGTTGGGTAAGGGCACGGTGGGGACTACTTACAAGGCGGTGCTCGACGACCGTCTGATCGTCTGCGTG AAGCGACTTGACGCCGGGAGATTGATCAACCCCGAATCGTCCGAGTCCAGCAGCAAGGAGTCGTTCGAGCAGCACATGGAATCGGTGGGCGGACTCAGAC ACCCTAATCTGGTTCCTCTCAGAGCATATTTCCAAGCCAGGCAGGAACGCCTCCTCGTCTACGATTACCAGCCAAACGGCAGCTTACACTCCCTCATCCA CGGGTCGAAATCGACGAGAGGGAAGCCGCTGCACTGGACATCGTGCTTGAAGATAGCGGAGGACGTGGCGCAGGGGCTGGCTTACATCCACCAAGCATGG AGGCTGGTCCACGGAAACCTCAAGTCAACCAACGTCCTACTGGGCCCGGACTTCGAGGCCTGCGTCACCGACTACTGCCTAGCCGTACTCGCTCAAATAC CGATGGCTGAAGATCCGGATGCGGCAGCTTACAAGGCGCCGGAAATGGAAAGTGGGACGTCGTCGGCGAAAGGCGATGTGTATGCGTTTGGGATTCTGCT GATGGAGCTGTTAACGGGGAAGGCGCCGTCGGAGCTGGCGTTTATGATGCCGGAGGAAATGATGAAGTGGGTGAGATACGGCGGGGGTGATGAGAATGAG GAGGAGGAAGAGGAAGGGAAGATCAGGAGAGGGAATAAGAGGATGGAGATGCTTTTGGAAGTTGCGGTGGGTTGTAGGTCGCCGGCAGCGGAGCAGAGGC CGACAATGTGGCAAGTGTTGAAGATGTTGCAGGAGATTAAAGAGAGTGTGCCGTTGGAGGATGAGGGAGCAGAGGCTAACTCGTAA
AA sequence Show only first row Show all	>Lus10018733 pacid=23176217 polypeptide=Lus10018733 locus=Lus10018733.g ID=Lus10018733.BGIv1.0 annot-version=v1.0 MEKKMLLVLLLLLSVSLASSLSDDAQSLLSFKSKADLNGLLHYPHKSTPNFCRLWQGVECSSGNRVVRLVLHDLPLAGVFPPDTLTRLDQLRVLSLQNNS LTGPIPDLSSLVNLKSLFLDHNYFSGSFPPSLASLHRLRTLDLSFNSLSGPLPSWLTSLDRLNTLRLEWNRFNESIPPLNQSSLDSFNVSHNNLTGAIPV TPTFLRLQISSFSTNPNLCGKIVHKECRPGSPFFGFPSSSSALAAPPPSSVQLGQSAELHGVDLSHPNHKRKSVIIGFSVAVFALIVSLLLCFVMAMRGK QKKKKSSNKGIDLSLDHTNDGGDAVVMQIDEKENELEEKVKKAQQGLQQMGKSGNLMFCAGEAQVYTLDQLMRASAELLGKGTVGTTYKAVLDDRLIVCV KRLDAGRLINPESSESSSKESFEQHMESVGGLRHPNLVPLRAYFQARQERLLVYDYQPNGSLHSLIHGSKSTRGKPLHWTSCLKIAEDVAQGLAYIHQAW RLVHGNLKSTNVLLGPDFEACVTDYCLAVLAQIPMAEDPDAAAYKAPEMESGTSSAKGDVYAFGILLMELLTGKAPSELAFMMPEEMMKWVRYGGGDENE EEEEEGKIRRGNKRMEMLLEVAVGCRSPAAEQRPTMWQVLKMLQEIKESVPLEDEGAEANS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43020			Leucine-rich repeat protein ki...		Lus10018733 [exp]	0	1
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	2.0	0.9334
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	6.5	0.8883
AT2G25270			unknown protein		Lus10001945 [exp]	7.9	0.8965
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	9.4	0.9072
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	13.6	0.8959
AT2G25270			unknown protein		Lus10001929 [exp]	14.9	0.8923
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	15.0	0.8829
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	15.5	0.8681
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	16.0	0.8817
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10021371 [exp]	16.5	0.8316

Compare expression of checked genes

Lus10018733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.