Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47128 472 / 9e-165 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 458 / 3e-159 Granulin repeat cysteine protease family protein (.1) AT3G19390 377 / 1e-127 Granulin repeat cysteine protease family protein (.1) AT1G09850 289 / 1e-93 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G36880 281 / 2e-91 CP1 cysteine proteinase1 (.1) AT4G23520 280 / 3e-91 Cysteine proteinases superfamily protein (.1) AT3G19400 264 / 1e-84 Cysteine proteinases superfamily protein (.1.2) AT4G11310 254 / 4e-81 RD21A, RD21 Papain family cysteine protease (.1) AT4G11320 249 / 6e-79 Papain family cysteine protease (.1) AT4G35350 248 / 1e-78 XCP1 xylem cysteine peptidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024801 [exp] 697 / 0 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 442 / 1e-152 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 418 / 3e-143 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 417 / 7e-143 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 327 / 4e-109 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 280 / 9e-90 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10028501 [exp] 248 / 7e-79 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10028502 [exp] 245 / 1e-77 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10032406 [exp] 244 / 3e-77 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024100 [exp] 528 / 0 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 441 / 2e-152 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 436 / 3e-150 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 309 / 4e-102 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 300 / 2e-98 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.005G232900 [exp] 274 / 1e-87 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 254 / 5e-81 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.011G066800 [exp] 257 / 2e-80 AT1G09850 359 / 7e-120 xylem bark cysteine peptidase 3 (.1) Potri.002G005700 [exp] 252 / 3e-80 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.012G090900 [exp] 246 / 9e-78 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF00396 [flax] [poplar] Granulin Granulin CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10018735 pacid=23176205 polypeptide=Lus10018735 locus=Lus10018735.g ID=Lus10018735.BGIv1.0 annot-version=v1.0 ATGGGGTCTATCAGATCCTCTGCCCCCATCTTCTTGCTCCTCTCTCTCCTATTCACCATCTCTTCCGCCTTGGACATGTCCATAATCTCCTACGACCAAA CCCACCGAGATGCCCCTGCCGTTTCCGCCACCTGGAGGACCGACGAAGAGGTCATGACCATTTACGAGGACTGGCTAGCCAAGCACGCCAAAGCCTACAA CGCTCTCGACGAGAAGGAGAAGCGTTTCCAGATCTTCAAGGACAACCTCCGCTTCATCGACCACCACAACTCCTTGAACCAGTCCTACACCGTCGGCCTC AACAAGTTCGCCGATCTCACCAACGACGAGTACCGCTCCAAGTACCTTGGCCTCCGCAGCGCTCAGAACAAGCTGAAGGAGTCCAAGCCTTCCCACCGCT ACGCTCCGCGCGTCGGTGATTCCTTGCCCGATTCTATTGACTGGAGGAAGAAAGGCGCCGTCGCTGCTGTCAAGGACCAAGGCGGTTGCGTAGCTATTGG AAATTCAAAATCTTCTGATGTGGGTAATTCTGTAATCGAGCCTGAGCGCAGTGAGTTAGAAGTTAATCGTGTCCGGCTCCGGCTCCGGCATAGCTACGGA GTTGCTGGGCGTTCTCGACGTTACGACGGCAGATGCGACTCTTACAGGAAAAGCAACGCCAAGGTAGTTTCAATCGAGAACTACGAGGATGTTCCGGTCA ATGACGAGTCCGCTCTCCAAAAGGCTGTCGCTAACCAGCCCATTTCCGTCGCTATCGAAGCTGGTGGCAGAGGGTTCCAACTATACACTTCGGGAATCTT CAGCGGACCGTGTGGAACGCAACTGGACCACGGAGTGGCAGCAGTAGGATATGGAAGCGAGGGGGGCAAGGACTACTGGATAGTGAGGAACTCATGGGGC GGGAGTTGGGGAGAGAAAGGGTACCTAAGGATGGAGAGGAACATAGCTGCAAAGACAGGGTTATGCGGCATTGCAATGGAGGCATCGTACCCGATTAAGG AAGGACAGAACCCGCCAAACCCAGGTCCATCACCGCCGACACCAGTGACTCCTCCCAGTGTTTGTGACGATTACTACTCATGCCCTTCCAGCGAAACCTG CTGCTGCATTTTCGCATTTGGACAGTACTGTTTCGAATGGGGATGTTGTCCTCTTGAAGGTGCCACCTGCTGTGAAGACCATTACAGTTGCTGCCCACAT GAGTACCCTGTCTGCAATGTTAACCAGGGCACCTGCATGATGAGCAAGAACAATCCATTGGCTGTGAAGTCAATGAAGAGCAACAGGGCGAAACCTCGCT TTAATCTTGGCCTTGGAAGGAGGAGCAATGTATAA
AA sequence Show only first row Show all	>Lus10018735 pacid=23176205 polypeptide=Lus10018735 locus=Lus10018735.g ID=Lus10018735.BGIv1.0 annot-version=v1.0 MGSIRSSAPIFLLLSLLFTISSALDMSIISYDQTHRDAPAVSATWRTDEEVMTIYEDWLAKHAKAYNALDEKEKRFQIFKDNLRFIDHHNSLNQSYTVGL NKFADLTNDEYRSKYLGLRSAQNKLKESKPSHRYAPRVGDSLPDSIDWRKKGAVAAVKDQGGCVAIGNSKSSDVGNSVIEPERSELEVNRVRLRLRHSYG VAGRSRRYDGRCDSYRKSNAKVVSIENYEDVPVNDESALQKAVANQPISVAIEAGGRGFQLYTSGIFSGPCGTQLDHGVAAVGYGSEGGKDYWIVRNSWG GSWGEKGYLRMERNIAAKTGLCGIAMEASYPIKEGQNPPNPGPSPPTPVTPPSVCDDYYSCPSSETCCCIFAFGQYCFEWGCCPLEGATCCEDHYSCCPH EYPVCNVNQGTCMMSKNNPLAVKSMKSNRAKPRFNLGLGRRSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	0	1
AT3G09470			Major facilitator superfamily ...		Lus10023760 [exp]	1.4	0.8117
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	1.7	0.8273
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10018636 [exp]	2.8	0.7828
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10023440 [exp]	6.7	0.7579
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	8.6	0.6945
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	10.5	0.7903
					Lus10022348 [exp]	12.6	0.7601
AT3G03890			FMN binding (.1.2)		Lus10010649 [exp]	21.2	0.7497
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	23.2	0.7315
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10037222 [exp]	24.6	0.7796

Compare expression of checked genes

Lus10018735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.