Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47056 634 / 0 VFB1 VIER F-box proteine 1 (.1) AT4G07400 630 / 0 VFB3 VIER F-box proteine 3 (.1) AT5G67250 553 / 0 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G50080 509 / 4e-177 VFB2 VIER F-box proteine 2 (.1) AT4G15475 105 / 1e-23 F-box/RNI-like superfamily protein (.1) AT2G25490 82 / 4e-16 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G27920 76 / 2e-14 F-box family protein (.1) AT5G23340 72 / 3e-13 RNI-like superfamily protein (.1) AT5G25350 72 / 3e-13 EBF2 EIN3-binding F box protein 2 (.1) AT5G01720 71 / 1e-12 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011506 [exp] 535 / 0 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10019319 [exp] 486 / 2e-168 AT5G67250 505 / 3e-176 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10024798 [exp] 283 / 2e-93 AT1G47056 179 / 4e-54 VIER F-box proteine 1 (.1) Lus10024799 [exp] 225 / 8e-72 AT4G07400 93 / 3e-23 VIER F-box proteine 3 (.1) Lus10012764 [exp] 114 / 3e-26 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 94 / 6e-20 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002913 [exp] 92 / 2e-19 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 88 / 6e-18 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10041087 [exp] 85 / 2e-17 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G023500 [exp] 798 / 0 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.002G123100 [exp] 791 / 0 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.007G048101 [exp] 571 / 0 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.005G141800 [exp] 547 / 0 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.006G081600 [exp] 329 / 3e-106 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.006G254100 [exp] 87 / 1e-17 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.017G061600 [exp] 84 / 6e-17 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.018G027700 [exp] 83 / 2e-16 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.017G056400 [exp] 81 / 3e-16 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.001G323100 [exp] 81 / 4e-16 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018737 pacid=23176184 polypeptide=Lus10018737 locus=Lus10018737.g ID=Lus10018737.BGIv1.0 annot-version=v1.0 ATGGGCCAGTCTAGTTCCACGGCTGCCGTCGTCAGCCGCCGGGATTCTAACTTCAGCCACCGCTTCAAATTCAAACCATCCTTCTCCTCCACCTCTCCTC CACCGATGAAGGGCGAAGAGGCTAGTGATTTCATGGTCTTCGAAGCGCCAGACTATATCTCGGATCTTCCTGATGAGTGCTTGGCTTGCGTTTTTCAATC ACTTAGCTCCGCTGACCGAAAGCGATCCTCCCAGGTCTGCCGCCGGTGGCTCACGATCGAAGGCCAGAGCCGTCACCGTCTCTCGCTCTACGCGCAGGCC GATCTCCTCGCGCTGATACCCACCTTGTTCAGTCGCTTCGACTCGGTCACCAAACTCGCTCTGAAATGCGAGCGTAGATCCACGAGCATCGGCGACGAAG CGCTCACAATGATCTCGCTTCGATGTAGGAACCTGACGCGTCTCAAGCTCCGGTCTTGCCGCGAGATCACCGACGCTGGCATGGAAGCTTTCGCGAAGAA TTGCAAGTCGTTGAAGAAGCTCTCGTGCGGATCTTGTAACTTCGGTGCTAAAGGTATGAACGCCATCCTTAATAACTGTGCATCTCTTGAAGAGTTATCG GTGAAGCGGCTCCGCGGAATCACCGATGGAGCTGCAGCCGAGCCGATTGGTCCAGGTTTGGCCGCATCTTCGCTCAAAACTATATGCTTAAAGGAGCTTT ACAATGGACAGTGTTTTGGGCCGCTTATCATTGGCTCGAAGAATCTGAGGACTTTGAAGCTTTTTAGATGCTCTGGCGATTGGGATAAGGTTCTGCAAGT GATTCCAGATCGGGTTTCCGCTTTGGTAGAAATCCATCTAGAGCGGCTCCAGGTTAGCGATGCTGGGCTCACGGCGTTGTCTAATTGTATCAGTCTGGAG ATATTGCACCTGGTTAAAACCCCAGAGTGCACGAATTATGGCTTGGTATTAGTTGCGGAGCAATGTAAGCTCTTGAGAAAGCTTCATATTGATGGATGGA AGGCCAACCGGATCGGAGATGATGGACTAATAGCTGTTGCTAAAAATTGCCCCAACCTACAGGAATTGGTTCTTATTGGAGTCAATCCCACCAAGACTAG TCTAGAGATATTAGCTTCAAACTGCCAAAACTTAGAGCGACTAGCTTTGTGTGGCAGCGATACTGTTGGCGATGCAGAGATATCTTGTATTGCAGCAAAA TGCACAGCGTTGAAAAAGCTTTGCATCAAAAGTTGCCATGTTTCTGATGAAGGAATGAGAGCTCTAGCAAATGGATGCCCCAACCTGGTGAAAGTGAAGG TAAAGAAGTGCAGAGGCGTAACTTGTGATGGTGCAGATTGGTTAAGATCAAGTAGAGAATCACTAGCGGTGAACTTGGATAGCGGTGAAGTAGAAGAGCA AGATGCAAACGGTAGCGATGGTGGCGGGGCGCAGGAAAATGGAGTTGAATATCCCCTGGTCCCTAACCAAATCCCTGCAGCACCTAATGCATCAGGTAGA ACTGCAAGATCAACTTCTTTCAAGGCAAGGGTGTTGAGTGGAAGGAGTTTAGTGGCTTGCACTTTGAGAAGATGGTCAAGTGGCAATGGCACTTCTCGGG GCTAA
AA sequence Show only first row Show all	>Lus10018737 pacid=23176184 polypeptide=Lus10018737 locus=Lus10018737.g ID=Lus10018737.BGIv1.0 annot-version=v1.0 MGQSSSTAAVVSRRDSNFSHRFKFKPSFSSTSPPPMKGEEASDFMVFEAPDYISDLPDECLACVFQSLSSADRKRSSQVCRRWLTIEGQSRHRLSLYAQA DLLALIPTLFSRFDSVTKLALKCERRSTSIGDEALTMISLRCRNLTRLKLRSCREITDAGMEAFAKNCKSLKKLSCGSCNFGAKGMNAILNNCASLEELS VKRLRGITDGAAAEPIGPGLAASSLKTICLKELYNGQCFGPLIIGSKNLRTLKLFRCSGDWDKVLQVIPDRVSALVEIHLERLQVSDAGLTALSNCISLE ILHLVKTPECTNYGLVLVAEQCKLLRKLHIDGWKANRIGDDGLIAVAKNCPNLQELVLIGVNPTKTSLEILASNCQNLERLALCGSDTVGDAEISCIAAK CTALKKLCIKSCHVSDEGMRALANGCPNLVKVKVKKCRGVTCDGADWLRSSRESLAVNLDSGEVEEQDANGSDGGGAQENGVEYPLVPNQIPAAPNASGR TARSTSFKARVLSGRSLVACTLRRWSSGNGTSRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	0	1
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10028319 [exp]	1.7	0.8938
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	2.0	0.8900
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	2.0	0.9037
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	2.2	0.8881
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	2.4	0.8942
AT5G49610			F-box family protein (.1)		Lus10037802 [exp]	2.6	0.8791
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	3.0	0.8756
AT5G13970			unknown protein		Lus10035116 [exp]	3.2	0.8635
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	4.2	0.8797
AT4G02720			unknown protein		Lus10042601 [exp]	6.3	0.8767

Compare expression of checked genes

Lus10018737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.