Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19510 291 / 3e-87 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT4G29940 189 / 2e-50 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT1G17920 44 / 0.0005 HD HDG12 homeodomain GLABROUS 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024826 [exp] 1093 / 0 AT3G19510 224 / 1e-62 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10020011 [exp] 204 / 3e-56 AT4G29940 429 / 7e-141 pathogenesis related homeodomain protein A (.1.2) Lus10015536 [exp] 186 / 2e-49 AT4G29940 440 / 4e-144 pathogenesis related homeodomain protein A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093000 [exp] 349 / 4e-107 AT3G19510 291 / 3e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.001G298400 [exp] 333 / 2e-101 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.018G142400 [exp] 199 / 5e-54 AT4G29940 461 / 4e-152 pathogenesis related homeodomain protein A (.1.2) Potri.006G075500 [exp] 197 / 2e-53 AT4G29940 466 / 6e-154 pathogenesis related homeodomain protein A (.1.2) Potri.012G018300 [exp] 52 / 8e-07 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 50 / 3e-06 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10018741 pacid=23176253 polypeptide=Lus10018741 locus=Lus10018741.g ID=Lus10018741.BGIv1.0 annot-version=v1.0 ATGAGCGAGAGTTCTCCTCACAGTGATGACCAGAAGTCAACCAATAATAAACAGTTCAAAACTACATCAACACAAATAGTGAGTAGCCCTAGCTGCTTAG AACGCTGGGCCAAGGGAACCCCAAAATCAAATAAAAAATCCATGTCAACTCCTTCAGCAGATAGTGACAGGAAGCTGCGGTCAAAGTCACAAGATAAGCA AAAAGCTACTGAGTCTAGTGGTAAGCAAAAAGCTACTGAGTCTAGTGGAAAGCCAGCTAATGTTAGCTCTGATAGGGAGAAACGAAGAAGAACAAAAATA AGAAGCAAGGAAGCTGTGACAAATGAGTATAAAAGGATCAGGTCTCACCTCCGGTATCTGTTGCAGCGGATGAAATTTGAGCAAAGCCTGATTGTTGCAT ATTCTGGTGAAGGCTGGAAAGGGCAAAATTTAGAAAAGTTGAAACCAGAGAAGGAGCTGCAGCGAGCCTCATCTGACATTTTTCGTCTCAAAACAAAAGT AAGGGAATTATTTAAACACATCGACTCCTTGTGTGCTGAAGGAAGCTTTCCAGCATCTTTGTTCGATTCCGACGGAGAGATTAGTAGCGAGGATATATAT TGTGCAAAATGTCAATCCAAAGAAGTTACGTTGGAAAATGATATTATACTTTGTGATGGTGCTTGTGACCGTGGATTCCACCAATTCTGTTTGGTACCTC ATTTGTTGAATGAAGACATTCCTCCCGATGACGAAGGCTGGTTGTGCCCTGGATGTGATTGCAAAGTTGATTGCATTGGTTTTCTTAATGACTACCTTGG AACCAATCTATCTATTGGTGATAGCTGGGAGAAGGTGTTCCCTGAAGCTGCAGCAACAGCATCTGCACCAGATATAGGTTCCACTTTTGGACTTCCCTCA GATGACTCGGATGATGGTGATTATGATCCGGATGATCCTGAACTCGAGCAGAAGAATGAAGTAGATGGATCAGGTTCTGATGAATCTGACTTCACTTCTG CATCCGAGGAACTTGGTGTTTCCAACAATGAGAAACTCTTGGGCCTTCCATCTGACGACTCAGAAGATGATGATTATAACCCCAATGATCCATATCTTGA TGAGACAGTGAAGGAGGAAGATGAAAGCTCTGGCTCTGATTTTTCATCTGATTCTGAGGATCTAGATGCTATTCTTGAGAACGATGGGCAGCCCAGAGCG GAAGGAAACCTTTCATGTGTTCAACTTGGTAAAACGAAGAATCGTTCATTAAATAATGAGCTATTATCAACGTCAAATCCAGTTGATGTTGTTGATGGTT CTCACATTGTCAAGTACTTAGGTCTTCCATCTGACGACTCAGAAGATGACGACTATAATCCAGATGGTCCATCTCCTGATGAGACAATGAAGCAGGAAAG CTCGGGTTCCGATTTTTCATCTGACTCTGAGTATCTGGATGCAGTTCTTGAGAATGATGAGTTGCCTGGAGTTAATGGAAACCATTCATTTGTTGAACTT AACGGGATGAAGAATCAGTCATTAACTAATGAGCCATCATCAACATCAAAGGCAGTTGAGGGCATTGATGGTTCCCTGTCCCTTACCAGGAAAAGGAATG TTGAAAGACTGGACTATAAAAAGCTGTTTGATGAAACATACGGAAATGGTTCATCTGATTCAAGTGATGATGAAGATTATACTGGTACTGTCCGGCAAAA GATTAGGAAACTTTCCACTGAGACTGCTCCATTCTCAACAAGTAGAACAGATGTTGTTAGCAAGTCTGCGCTGAAATCTTTGGAAATAAAGAAATCCCTT GGGGACAATGACGACCAAGGTTCTTCTCTGTCAACTCCTATTCGTAAAAGAAATGCAATCTATAAGAAACTCGGGGAAGCAACGATCCAGAGGCTTCGTC AATCCTTTGTGGAGAATCGGTATCCTAACCATTCCACAAAAGAGAAGTTGGCTAAAGAGCTAGAACTTACAGTCCGTCAGGTTGGCAAATGGTTCGAGAA TGCTCGTTGGAACTATAACCATCCAGCTGATAGGGCAAGTAAACGTTCTTCTGCAAAGGACAGTCCTGCAGTCCCTTCAACAGACGACAACAAACAGTTT GGGAACGACGTTGGAAAGTTTAATGTAGGTAAAAATGAGGATACAGTAAAGAAAAACGATGATGTTGCTGAAAGATTGCAGGGACAAGTAGCTTCTAAAT CAGTATCAAGAGGTAGAAAACGTAAACCGGGTAAACAAATGATGGGGGAAGAAGCAATTTCTGGAACAGCAGCGAGTTCGCCAACTACACCACCGGTGAT CGTGTTGGGGTTACGAGCTCACAGAGGAGAATAA
AA sequence Show only first row Show all	>Lus10018741 pacid=23176253 polypeptide=Lus10018741 locus=Lus10018741.g ID=Lus10018741.BGIv1.0 annot-version=v1.0 MSESSPHSDDQKSTNNKQFKTTSTQIVSSPSCLERWAKGTPKSNKKSMSTPSADSDRKLRSKSQDKQKATESSGKQKATESSGKPANVSSDREKRRRTKI RSKEAVTNEYKRIRSHLRYLLQRMKFEQSLIVAYSGEGWKGQNLEKLKPEKELQRASSDIFRLKTKVRELFKHIDSLCAEGSFPASLFDSDGEISSEDIY CAKCQSKEVTLENDIILCDGACDRGFHQFCLVPHLLNEDIPPDDEGWLCPGCDCKVDCIGFLNDYLGTNLSIGDSWEKVFPEAAATASAPDIGSTFGLPS DDSDDGDYDPDDPELEQKNEVDGSGSDESDFTSASEELGVSNNEKLLGLPSDDSEDDDYNPNDPYLDETVKEEDESSGSDFSSDSEDLDAILENDGQPRA EGNLSCVQLGKTKNRSLNNELLSTSNPVDVVDGSHIVKYLGLPSDDSEDDDYNPDGPSPDETMKQESSGSDFSSDSEYLDAVLENDELPGVNGNHSFVEL NGMKNQSLTNEPSSTSKAVEGIDGSLSLTRKRNVERLDYKKLFDETYGNGSSDSSDDEDYTGTVRQKIRKLSTETAPFSTSRTDVVSKSALKSLEIKKSL GDNDDQGSSLSTPIRKRNAIYKKLGEATIQRLRQSFVENRYPNHSTKEKLAKELELTVRQVGKWFENARWNYNHPADRASKRSSAKDSPAVPSTDDNKQF GNDVGKFNVGKNEDTVKKNDDVAERLQGQVASKSVSRGRKRKPGKQMMGEEAISGTAASSPTTPPVIVLGLRAHRGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10018741 [exp]	0	1
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10015787 [exp]	2.0	0.8806
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	2.0	0.8825
AT5G37790			Protein kinase superfamily pro...		Lus10033588 [exp]	4.6	0.8625
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	6.0	0.8673
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	9.4	0.8755
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	11.4	0.8689
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	12.5	0.8509
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	13.3	0.8611
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	14.6	0.8758
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	17.7	0.8564

Compare expression of checked genes

Lus10018741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.