Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024827 [exp] 273 / 9e-96 ND 40 / 3e-04 Lus10024825 [exp] 121 / 7e-36 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024000 [exp] 42 / 7e-05 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 41 / 0.0001 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10018742 pacid=23176169 polypeptide=Lus10018742 locus=Lus10018742.g ID=Lus10018742.BGIv1.0 annot-version=v1.0 ATGGCTTATAACTCTTGCAAATTAGCGATCCTCATATTCGTCACCGCCGGCGTGATTCTGCCGCGGGGAACTGCATATGACGGCGACTTTAAGTACTTCG GATGCAACGAGAAGTCGGACAAGATTCCGGCAGGCGGCGGCTACGCCAGCGACATAAAGGAAGCTCTGGCCAAAGTGACGGAGTGCACGAAGCCAGGTGT GTGGGACGGGAGCTGCAAAATCAAAGTTCCTGATGACTCGGAGCAAGCCAGAGTGTTTGGACATGGGCAGTGCAAGGGTAATGGCGGGATTTCACTGAGG CTGCCGGTGGAAATGGCGATCGAGAGTGAGTGCACGGATTGTTTAAAGGCTGCCGCTGGCTACCTTCTTTCCAACTGTAATTATACAGAGGCTGATGTTG TTTATGATCTATGTTCTATGAGCTACAGCTACAGAGACCTTTGA
AA sequence Show only first row Show all	>Lus10018742 pacid=23176169 polypeptide=Lus10018742 locus=Lus10018742.g ID=Lus10018742.BGIv1.0 annot-version=v1.0 MAYNSCKLAILIFVTAGVILPRGTAYDGDFKYFGCNEKSDKIPAGGGYASDIKEALAKVTECTKPGVWDGSCKIKVPDDSEQARVFGHGQCKGNGGISLR LPVEMAIESECTDCLKAAAGYLLSNCNYTEADVVYDLCSMSYSYRDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018742 [exp]	0	1
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	1.0	0.9845
AT1G76250			unknown protein		Lus10012274 [exp]	2.8	0.9727
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10021122 [exp]	5.8	0.9352
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	7.5	0.9702
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	8.3	0.9718
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	8.8	0.9688
AT2G23810		TET8	tetraspanin8 (.1)		Lus10018792 [exp]	8.9	0.9302
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	11.2	0.9702
AT4G20040			Pectin lyase-like superfamily ...		Lus10036230 [exp]	13.0	0.9020
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	13.2	0.9671

Compare expression of checked genes

Lus10018742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.