Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03060 2546 / 0 SPI SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT4G02660 2226 / 0 Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT1G58230 49 / 7e-05 binding (.1) AT3G60920 46 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024828 [exp] 3383 / 0 AT1G03060 4870 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215400 [exp] 2795 / 0 AT1G03060 5153 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.002G047700 [exp] 2754 / 0 AT1G03060 5063 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018743 pacid=23176236 polypeptide=Lus10018743 locus=Lus10018743.g ID=Lus10018743.BGIv1.0 annot-version=v1.0 ATGAAATGGGTTACATTGCTTAAGGACATCAAAGAGAAGGTCGGGTTAACTCAAGCTCCAGCTGCTCCTTCTTCATCCGCTGCTGCTCCTGCTGCTTCTT CTTCTTTTTCCTCCTCTTTGTCTGGTTACCCACCCAATCGGGATACCGACGCTTCCCCTCTATCTTCCATTTTCAAAAGCTACAACACTTCCCCTGAGAG AGATAGACATGAGTTGGAATTGGACTTCAAGAGGTTTTGGGAGGAGTTCCGTTCATCCAGCTCCGAGAAGGAAAAAGAAACGGCCCTGAATCTCACTGTA GATATCTTTTGTAGATTAGTAAAGCAGCATGCTAATGTAGCTCAATTAGTTACCATGTTAGTTGAAACACATATATTCTGTTTTGTTGTTGGAAGAGCGT TTGTAACTGATATCGAGAAGATAAAAATTAGTAGCAAAACAAGATCTTTGGATGTAGAGAAACTGTTGAGATTCTTTTCGGAGATTTCAAAGGAAGACAT CCGTCCTGGATCAAATTTATTAACTGCTTTAGAAGTCCTTGTATCTGGACCCATTGATAAGCAGTCCCTTCTTGATTCTGGGATATTATGCTGTCTCATC CAAATTCTGAATGCCTTTCTGAGTCCTGAAGCCAGTAGCGAACAAAGGTCTGGTGATAGTGAAGAAAAAAGGTTGCTTGGAGGAGGAAATGATAAAAATG TTGGTGAGGGTCGCCGTCTGGAGGTGGAGGGACGAGTAGTACACATTATGAAAGCACTGGCAAGCCATCCTTCAGCAGCACAGTGTTTGGCTGAGGATGA TTCACTTCAAATGCTTTTCCAGATGGTTGCGAATGGATCTCAAAAAGTATTCTCTCAATATAAAGAAGGTCTTCTTTCTCTTCACAGCATGCAGCTTCAT AGACATGCAATGCAGATACTTGGCCTTCTTTTGGTCAGTGACAATGGAAGCACAGCCAAGTATATACGTAAACATCATCTGATAAAAGTTCTCTTAATGG CGATCAAAGATTTCAATCCGGATTCTGGTGATCCAGCCTATACAATGGGCATTGTTGACCTGTTGCTCGAATGTGTTGAAGTATCACACAGGCCTGAGGC TAATAGTGTCAAACTCAGGGAAGATATACATAATGCTCATGGATATCAGTTCCTTGTTCAGTTTGCATTGGTATTGTCCTCCATGCCGCAAAAGCAGGCT TCTCAGCCTGTTTATCTTAGGGGTTCTTCAGATCTAGATCACTTGTCAGAAGACGTGGAAAGAAATAGTGTCACAGTCAAAGACCCCTTGGAGGTTAATC TGTCTCCTGTGTTAGCTAGGTTACTTGATGTTCTTCTCAATCTCGCTCAGATAGGTCCACCTGAATCAGCAGGATCTCCTGGGGGAAAGCTTTCTAAGTC TACTCTTAATAGGTCAGGTGGTTATAGAAGCCGTACTTCTTCTCTTGATTCTGCTGAAAGCTGGGAAAAAGACAATACAAAGGTTAAAGACCTTGAAGCT GTGCAGATGTTGCAAGATATCTTTCTGAAGGCTGAGAGTAGAGAACTTCAGGCTGAAGTGCTAAATAGGATGTTTAAGCTTTTTTCAAGTCATCTCGATA ATTATCAATTGTGTCAGCAATTACGAACAGTTCCACTTCTTATCCTGAACATGGCGGGTTTCCCTCCTCCTTTGCAAGAAATAATCCTGAAGATTCTTGA ATATGCTGTGACCGTTGTTAATTGTGTTCCTGAGCAAGAACTGCTTTCTCTTTGTTGCTTACTGCAGCAACTAATTTCTTCAGAGCTGAAGCAAACTATT CTGTCATTCTTTGTGAAACTGTTGTCCTTTGACCAACAATACAAGAAAGTCTTGCGTGAAGTTGGTGTGCTGGAAGTTCTATTAGATGATTTGAAACAGC ACAAGTTTCTTTCTACCCCAGATGAAGCAAGCATCGAGCAAGACCAGCCTGATAGAAAATCAGGATCAAGCAGCTTCAAGAAACACTGGGACAGTAAAGA TGTTATCCTTTCTTCTCCCAAGCTAGTGGAATCTGGTTCAAGAAAGTTCCTGATATTTGAAATGGAGAGTACTGTGTCTGTAGCATGGGACTGTATGGTA TCTTTATTGAAGAAAGCGGAAGCAAATCAGGCATCATTCAGAGCAGCTAACGGTGTGACTATCATTCTCCCGTTTCTTGTGTCAGACGTCCATCGTGCTG GAGCCCTCCGGATTCTGTCATGTTTGATTGCTGAAGATGTTACACAGGATCACGCCGAAGAACTGGGTGCACTTGTTGAGGTTCTTAAGAGCGGAATGAT TACAAGTGGCACAGGACATCAATACAGGCTTCAAGTGGATGCCAAATGTGACACAATGGGCGCTTTGTGGCGTGTTCTGGGGATGAACAGTTCTGCACAG AGGGTTTTTGGTGAAGCCACTGGGTTTTCTCTTCTGCTGACTATGCTGCATAGCTTCCAAGGTGAAGGGGGTCAGAGCAATGAATCTTCACAAGTGTTGT TTATCAAGTTGTTCACATACTTATTACGTCTCATGACAGCTGGAGTCTGTGATAATGTTATTAATAGGATGAAATTGCACACAATAATTTCATCTCATAC TTTCTATGACCTTCTATGTGAGTCTGGACTGCTTTCTGTGGAGTGTGAAAGGCAGGTCATACAGTTGTTATTTGAGCTTGCCCTTGAAATTGTGATCCCC CCATTCTTGGTATCAGACAGTGCAACATCAACTGAAATGCTCAACCCTGATTCTGCTGTTTTTCTTCTGATTACTCCATCTGGTTTGTTTAATCCTGACA AAGAGAGAGTGTATAATGCTGGTGCTGTTAGAGTGCTCATTCGTTCATTATTGCTCTTCACTCCTAAGGTGCAGTTGGAAGTGCTTAATCTTATTGGCAG GCTTGCTCATGCACGTCCCTTCAATCAGGAAAACCTCACATCCGTAGGTTGCATTGAGCTTCTGTTGGAAACAATTCACCCTTTCCTATCCAGCAGTTCT ACATTGCTTACTCATGCATTGAAGATTGTTGAAATTCTTGGAGCATACAGGATGTCTGCATCTGAGCTTCGATTGCTTATTAGATTTGTTCTTCAAATGA GGAAGATGAATTCAGGACATATTCTTGTTGAGATGATGGAAAGATTGATTCTAACTGAAGATATGTCTGGTGAGAATGTAGCTTTAGCGCCGTTTGTGGA GATGGATATGAGCAAGATTGGACACGCTGCTGTTCAGGTGTCACTTGGGGAAAGATCTTGGCCCCCTGCTGCTGGCTATTCGTTTGTTTGCTGGTTTCAG TTTAAGAACTTCGCAAAAGCTCAAGCGAGGGATGTGGAACCATCCAAAGCTGGACCCTCTAAGAGGAGAGCCATTTCCAGTGGCCAGAATGACCGCCATC TGCTTCGGCTGTTTTCTGTTGGTTCTGTAGATAAAGAGAACATGTTTTATGCAGAGCTATACCTGCAAGAAGATGGTGTTCTAACTCTTGCTACAAGTAA CTCTTGCTCCTTGTCTTTCTCTGGCTTGGAACTGGAAGAGGGCAGATGGCATCACCTTGCTGTTGTTCATAGCAAACCTAATGCTCTTGCTGGACTATTT CAAGCTAGTGTTGCATATGTGTATCTTAATGGGAAACTCAGACATACAGGAAAACTAGGGTATTCCCCTTCTCCTCCTGGAAAGGCATTGCAGGTAACAA TTGGGACGCCGCTTACTTGCACCAGAGTTAGCAACTTGACCTGGAAACTGCGTTCTTGCTATCTTTTTGAGGAGGTGCTTACATCAGGGTGTATATGTTT TATGTACATTCTTGGTCGAGGATACAGGGGCCTATTCCAGGACTCTGATATTCTGCGCTTTGTCCCCAACCAAGCTTGCGGGGGAGGCACAATGGCAATT TTGGATTTACTAGATGCAGAGTTGACCTTGGGAAGCACACATAAAACTGATGCTACTGGCAGGCATGTCGACTCCAAGGCAGATGGTAGTGGGATTGTTT GGGACTTGGATAGGCTGTCAAACCTATCTTTGCAGCTCTCTGGGAAGAAACTAATTTTTGCATTTGATGGAACATGTGCTGAAGCTGTCCGTGCATCTGG GACTTTCTCTCTGCTCAATTTGGTTGATCCTATGTCTGCTGCAGCTTCTCCAATAGGAGGCATACCACGGTTCGGACGTCTCTATGGCGACGTACATGTT TGTAGACAATGTGCAATTGCTGATACGATTTGCCCAGTTGGGGGTATGGCAGTTGTTCTTGCACTAATTGAAGCTGCTGAAACAAGGGATATGCTTCACA TGGCTCTAACGTTACTTGCCAGTGCACTACATCAGAACCCTCAGAATGTGAAAGACATGAAACAATACAGGGGCTATCACTTATTGGCTCTGTTCTTGCG TCGGAGAATGTCTCTATTTGACATGCAATCGCTTGAGATCTTTTTCCAAATTGCCGCATGTGAGGCTTCATTTTCCGAACCAAAGAAGTTGGGTAGCTCT CAAGTGATTTTATCTCCCGGTACAACCTTACCAGATGCTAGCTTTGAGGATCTTGGCCTGTCTAGGTTTCGTGATGAAACCTCATCTGTTGGATCGCATG GTGATCTGGATGATTTCTCTGCACATAAAGATTCATTCAGTCATATTTCAGAGCTGGAAAATTCTGATACGGACGTTGAAACTTCAAATTGTATTGTCTT GTCCAATGCTGATATGGTTGAGCATGTATTGCTGGATTGGACTTTGTGGGTAACATCCCCAGTTCCAATTCAGATTGCACTACTGGGATTTCTGGAGCAT TTGGTTTCAATGCACTGGTACAGGAATCATAACCTCACGGTCCTTCGTCGAATTAACCTGGTTCAACATTTATTAGTGACTTTGCAGCGCGGTGATGTTG AAGTTCCAGTGTTAGAGAAGTTGGTTGTATTGCTTGGGGTAATCTTGGAAGATGGCTTTGTGGTTTCTGAGCTCGAAAATGTTGTTAGGTTTGTCATTAT GACATTTGACCCCCCTGAAGTGAAACCGAGGCATCAATTAACACGAGAGTCAATGGGTAAGCATGTAATCGTAAGAAATATGCTCCTTGAAATGCTTATC GATCTCCAGGTGACTATCAGAGCAGAAGAGTTGCTTGAGCAATGGCATAAGATTGTATCGTCAAAGTTGATTACATATTTTCTTGATGAAGCTGCCCATC CTACGACCATGAGATGGATAATGACTCTTCTTGGTGTGTGTCTTGGTTCTTCTCCAACATTTGCTCTTAAATTTCGTACAAGTGGTGGATATCAGGGCTT AGTGCGGGTTCTTCCTAGTTTTTATGATTCCCCTGAAATATATTACATTTTGTTCTGTCTAATATTTGGAAAGCCAGTTTACCCAAGGTTGCCAGAAGTG CGTATGCTAGATTTTCATGCCCTTATTCCAAGTGATGGAAGTTACGTGGAACTGAAATTCGTGGACCTGTTGGACTCTGTAATTGCAATGGCAAAATCAA CCTTTGACAGGCTGAGTTCACAGTTTATGCTTGCATATGAAACTGGAAATCTGTCGCAGATTGGTGCAAGCCTTGTGGCTGAGCTCGTTGATGGAAATGT AGATAAAATGCAGATATGGCAGGAGAGCTTCAGGGTGAAGCTCTGA
AA sequence Show only first row Show all	>Lus10018743 pacid=23176236 polypeptide=Lus10018743 locus=Lus10018743.g ID=Lus10018743.BGIv1.0 annot-version=v1.0 MKWVTLLKDIKEKVGLTQAPAAPSSSAAAPAASSSFSSSLSGYPPNRDTDASPLSSIFKSYNTSPERDRHELELDFKRFWEEFRSSSSEKEKETALNLTV DIFCRLVKQHANVAQLVTMLVETHIFCFVVGRAFVTDIEKIKISSKTRSLDVEKLLRFFSEISKEDIRPGSNLLTALEVLVSGPIDKQSLLDSGILCCLI QILNAFLSPEASSEQRSGDSEEKRLLGGGNDKNVGEGRRLEVEGRVVHIMKALASHPSAAQCLAEDDSLQMLFQMVANGSQKVFSQYKEGLLSLHSMQLH RHAMQILGLLLVSDNGSTAKYIRKHHLIKVLLMAIKDFNPDSGDPAYTMGIVDLLLECVEVSHRPEANSVKLREDIHNAHGYQFLVQFALVLSSMPQKQA SQPVYLRGSSDLDHLSEDVERNSVTVKDPLEVNLSPVLARLLDVLLNLAQIGPPESAGSPGGKLSKSTLNRSGGYRSRTSSLDSAESWEKDNTKVKDLEA VQMLQDIFLKAESRELQAEVLNRMFKLFSSHLDNYQLCQQLRTVPLLILNMAGFPPPLQEIILKILEYAVTVVNCVPEQELLSLCCLLQQLISSELKQTI LSFFVKLLSFDQQYKKVLREVGVLEVLLDDLKQHKFLSTPDEASIEQDQPDRKSGSSSFKKHWDSKDVILSSPKLVESGSRKFLIFEMESTVSVAWDCMV SLLKKAEANQASFRAANGVTIILPFLVSDVHRAGALRILSCLIAEDVTQDHAEELGALVEVLKSGMITSGTGHQYRLQVDAKCDTMGALWRVLGMNSSAQ RVFGEATGFSLLLTMLHSFQGEGGQSNESSQVLFIKLFTYLLRLMTAGVCDNVINRMKLHTIISSHTFYDLLCESGLLSVECERQVIQLLFELALEIVIP PFLVSDSATSTEMLNPDSAVFLLITPSGLFNPDKERVYNAGAVRVLIRSLLLFTPKVQLEVLNLIGRLAHARPFNQENLTSVGCIELLLETIHPFLSSSS TLLTHALKIVEILGAYRMSASELRLLIRFVLQMRKMNSGHILVEMMERLILTEDMSGENVALAPFVEMDMSKIGHAAVQVSLGERSWPPAAGYSFVCWFQ FKNFAKAQARDVEPSKAGPSKRRAISSGQNDRHLLRLFSVGSVDKENMFYAELYLQEDGVLTLATSNSCSLSFSGLELEEGRWHHLAVVHSKPNALAGLF QASVAYVYLNGKLRHTGKLGYSPSPPGKALQVTIGTPLTCTRVSNLTWKLRSCYLFEEVLTSGCICFMYILGRGYRGLFQDSDILRFVPNQACGGGTMAI LDLLDAELTLGSTHKTDATGRHVDSKADGSGIVWDLDRLSNLSLQLSGKKLIFAFDGTCAEAVRASGTFSLLNLVDPMSAAASPIGGIPRFGRLYGDVHV CRQCAIADTICPVGGMAVVLALIEAAETRDMLHMALTLLASALHQNPQNVKDMKQYRGYHLLALFLRRRMSLFDMQSLEIFFQIAACEASFSEPKKLGSS QVILSPGTTLPDASFEDLGLSRFRDETSSVGSHGDLDDFSAHKDSFSHISELENSDTDVETSNCIVLSNADMVEHVLLDWTLWVTSPVPIQIALLGFLEH LVSMHWYRNHNLTVLRRINLVQHLLVTLQRGDVEVPVLEKLVVLLGVILEDGFVVSELENVVRFVIMTFDPPEVKPRHQLTRESMGKHVIVRNMLLEMLI DLQVTIRAEELLEQWHKIVSSKLITYFLDEAAHPTTMRWIMTLLGVCLGSSPTFALKFRTSGGYQGLVRVLPSFYDSPEIYYILFCLIFGKPVYPRLPEV RMLDFHALIPSDGSYVELKFVDLLDSVIAMAKSTFDRLSSQFMLAYETGNLSQIGASLVAELVDGNVDKMQIWQESFRVKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018743 [exp]	0	1
AT2G45540			WD-40 repeat family protein / ...		Lus10009307 [exp]	1.4	0.9792
AT5G15680			ARM repeat superfamily protein...		Lus10031961 [exp]	2.0	0.9770
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	2.4	0.9768
AT5G23110			Zinc finger, C3HC4 type (RING ...		Lus10001530 [exp]	3.5	0.9702
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	4.0	0.9740
AT2G46560			transducin family protein / WD...		Lus10005975 [exp]	4.5	0.9733
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	6.0	0.9686
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10005090 [exp]	6.6	0.9676
AT2G46560			transducin family protein / WD...		Lus10030236 [exp]	8.5	0.9535
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	9.5	0.9692

Compare expression of checked genes

Lus10018743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.