Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03060 2506 / 0 SPI SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT4G02660 2333 / 0 Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT1G58230 385 / 2e-108 binding (.1) AT2G45540 385 / 3e-108 WD-40 repeat family protein / beige-related (.1.2) AT3G60920 196 / 6e-50 unknown protein AT5G18525 105 / 2e-22 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) AT3G49660 55 / 3e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 49 / 1e-05 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 50 / 2e-05 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G49040 49 / 4e-05 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024828 [exp] 3199 / 0 AT1G03060 4870 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10009305 [exp] 384 / 9e-110 AT2G45540 1969 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10042866 [exp] 378 / 3e-106 AT1G58230 2871 / 0.0 binding (.1) Lus10015858 [exp] 358 / 4e-106 AT2G45540 1209 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10028167 [exp] 363 / 2e-101 AT1G58230 3404 / 0.0 binding (.1) Lus10003487 [exp] 52 / 2e-06 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 51 / 5e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10043473 [exp] 50 / 3e-05 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10034114 [exp] 50 / 3e-05 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215400 [exp] 2702 / 0 AT1G03060 5153 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.002G047700 [exp] 2601 / 0 AT1G03060 5063 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.002G150000 [exp] 387 / 4e-109 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G111000 [exp] 385 / 2e-108 AT1G58230 3474 / 0.0 binding (.1) Potri.014G072600 [exp] 377 / 6e-106 AT2G45540 3647 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.010G153300 [exp] 108 / 2e-23 AT5G18525 1878 / 0.0 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) Potri.007G009500 [exp] 51 / 3e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 50 / 7e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 49 / 3e-05 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.001G173500 [exp] 49 / 4e-05 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF02138 [flax] [poplar] Beach Beige/BEACH domain
Representative CDS sequence Show only first row Show all	>Lus10018744 pacid=23176280 polypeptide=Lus10018744 locus=Lus10018744.g ID=Lus10018744.BGIv1.0 annot-version=v1.0 ATGGGCGGGGAAGCATCAGCTCCTGCTGCTGCAACCTCAGTGCTGAGGTTTATGGTCGACTTAGCAAAAATGAGCCCTGCCTTTTCGGCTGTTTGCAGGA GGACAGAATTTCTTGAAAGTTGCATTGACCTGTACTTTTCTTGCATCAGGGCTGCTTATGCAATAAAGATGGCAAGAGTGCTCTCTGAAAAGGCTGAAGA TAAGAACTTTAATGACTTTGATGATGCTGGTAGTTCACAGAACGCGTTTTCAAGTATGCCTCATGAACAAGCACATTCTGTGAAGACATCCATTAGTGGT GGGAGCTTTCCTCAAGCGCCGGCAAGTACAAGTTCTGAGGACATGCGCGGTCCTCAAAATTACACTGATGATGATAAAGCAGATAGGACGATCACCAATA CCAAGCTGGACCCTGAAAAGCTGAATGAAGAATGTGTTCGGATGGCAGATGGTGAGACTGCTGACAAATTTTCTCACACATCCAGCTCGAATGAGGTTAC AGTACATAATACAGATGACACTGTAGATGGTACTCGACAAGCTGATTCTCAGAGTTCAGCATCACTCACAATTTTTGATTCTCCTGTTATATCTGAAAAA TCCAGTATGAAAGTTGCTTTCACGCCCTCTTTATCTCCTGCCATTGTGCTACATTCAGCAATGAGTGGTGTGAACCAAAGTGAATACAAATCTGTGCCAC TAAGTCCTTCTGTGGAATCATGTGTCTCTGTTAGCGAATATGATTCATATACCGACTTAAAGCCTAGTTCTCAAGGATCATTAGCTACGAATGCCTCATC TACAGTCAGCGCACAACTACTTCTTGAAATAGATGATTCTGGCTATGGAGGTGGTCCATGTTCTGCTGGAGCAACTGCTGTGTTGGATTTTGTGGCAGAA GTTCTTTCAGAACTGTTTACAGAGCAGATGAAAGCAGCACAAGCTATAGAGGGCATCTTGGAAATGGCACCTTTGTACGTTGATGCTGAATCTATGTTAG TTTTCCAGGGATTATGCCTTAGTAGACTAATGAACTTTGTTGAAAGACGCCTTCTACGAGATGATGAGGAAGATGAGAAAAAGCTTGACAAAACTCTGTG GACTTCAAATTTGGATGCATTATGCTGGATGATTGTTGATCGTGTATATATGGGTGCTTTTCCTCAACCTGGTGATGTGCTGAGAACTGTTGAATTCTTG TTGTCAATGTTGCAGTTGGCAAACAAAGATGGTCGTATTGAAGAAGCAGCTCCTGTGGGTAAGGGGCTTCTTTTTACAAGAGGAAGCAAACAACTCGATG CTTTTATACTTTCATTACTTAAGAACACCAACAGGATGATCTTATATTGCTTTCTGCCTACATTTTTGGTTTCCATTGGGGAGGAGGATCATCTGTCAAG TTTAGGTTTACTTGCTGAACCCAAGCAAAGACCACCATCAACGTCGTCACAGGATGATCCTGGAACAGATATTACTACTGTCTTACAGTTATTAGTTGCT CACAGACGTATATTATTCTGCCCTAGCAATCTTGACACTGAAGTCAATTGTTGTCTTTGCATCAATCTAGTTGCTCTCCTCCATGACCAACGACAAAGTG TTCAGAATGTTGCTATTGATATTCTTAAGTATCTGCTGGTGCATCGGAGGGCTGCACTAGAAGACTTACTTGTTGCTAAACCCAATCAGGGGCAACAAAT AGATGTACTCCATGGTGGGTTTGACAAATTGTTGACTGGAAATTTATCTGTTTTTTTCCACTGGTTTGATAGTTCAGAACATCTGGTCAATAAAGTGTTG GAACAGTGTGCATCTATCATGTGGGTACAGTATGTTGCAGGATCTGCTAAGTTTCCTGGCGTGAGAATCAAAGGGATGGAGAGTCGTCGTAAAAGGGAAA TAGGGAAAAGATCACGTGATATTTCGAAGTTGGACCTCAGACACTGGGAGCAGGCAAATGAGCGGAGGTGTGCGTTAGATATGGTTCGGGATGCAATGTC TACTGAGTTGAGGGTTGTTCGTCAAGATAAGTATGGATGGGTTCTTCATGCTGAAAGTGAATGGCAAACACTTGTTCAACAACTTGTCCATGACCGTGGC ATTTTCCCAATGCGCAAATCCTCCGTGACTGAAGATCCAGAGTGGCAACTTTGTCCCATTGAAGGTCCATACAGAATGCGTAAGAAGCTAGAAAGGTGCA AATTGAAAATTGACACTGTTCAAAATGTTCTTGATGGGGAGTTTGAATTGGGAGAAACAGAACTATCTAAAACTAAACATGATAATGGGATTGATGACTC TGATACGGATTCTGAGTTATTTTTCAATCTATTGACTGAGGATGACAATCTGACTGGTGAAGATAGTGAGATGTATGGGGAAACTTTCAAGGATGCAGTT GGACCCAAAGGTGTTGCTTCTGTTAAGAGTGGATGGAATGATGACAAAACTAGCAGTGTGAATGAACCAAGTCTTCATTCAGCACAAGATTTTGGTGTCA AGTCCAATGCGTATTCCGTTCCTGTGTCAGAAAGCATGCAAGAAAAGTCTGACCTAGGGTCTCCTAGGCAATCATCAACAAATAGAACTGATGATGGGAA AGTGATTGACGATAAGTCAGATAAGGAACTCACTGACAACGGTGAATATCTTATTAGGCCATATTTGGACCATCTGGAAAAGATTCGATTCAAGTATAAC TGTGAACGGGTTGTGGGTCTTGATAAACATGATGGTATATTTTTAATAGGAGAGTTTTCTTGGTACATCATAGAGAACTTCTTTATTGATGAGAATGGGT GCATCTGTGAGAAAGAATCCGAAGATGAACTCTCCGTCATTGATCAAGCTTTGGGTGTGAAGAAGGATGCTATGAGTAGCATGGATTTTCAGTCCAAGTC ATCTGCCTCTTGGACTACGACAGTGAAAGCATGCAGTGGTGGAAGAGCATGGGCTTATAATGGTGGTGCATGGGGTAAGGAAAAAGTAGGTAACAGTGTT AACTTGGCTCATCCCTGGCATATGTGGAAGCTAAATAGTGTTCATGAGATCTTAAAACGTGACTATCAGCTCCGTCCTGTTGCAATTGAGGTATTTAGCA TGGATGGATGTAATGATCTCCTGGTATTCCACAAAAAAGAGAGAGAGGAGGTGTTCAAAAATCTGATTGCTATGAATCTGCCCAGAAACAGCATGTTGGA CACCACGATTTCAGGATCAGCAACGCAGGAAAGCAATGAAGGTAGCCGTTTGTTCAAGTTAATGGCTAAATCCTTCTCAAAAAGGTGGCAAAATGGAGAG ATAAGCAACTTCCAATATCTTATGCATCTCAACACACTGGCTGGCAGGGGATATAGTGATCTTACTCAGTATCCGGTGTTTCCATGGGTTCTTGCTGATT ATGAAAGTGAATCTCTTGATTTATTCAATCCTAAAACTTTCCGACAGCTTGATAAACCCATGGGTTGTCAGACTGTCGAAGGGGAAGAAGAGTTTAAGAA AAGATATGAGAGCTGGGATGACCCAGAGGTTCCAAAATTTCATTATGGTTCTCACTATTCTAGCGCTGGAATTGTCCTATTCTACCTTGTACGCTTGCCG CCTTTCAGCACAGAGAATCAGAAGCTGCAAGGGGGACAGTTTGATCATGCTGATCGTCTTTTTAATAGTATCAGAGACACCTGGTTTAGTGCTGCTGGAA AGGGTAACACTTCTGATGTGAAAGAACTTATTCCAGAGTTCTTTTACATTCCAGAGTTCCTGGAGAACAGATTCAACCTTGACTTGGGAGAAAAGCAATC GGGAGAGAAGGTTGGGGATGTCACGTTACCACCATGGGCTAAAGGCAGTGTTAGAGAATTCATTAGGAAGCATAGGGAAGCACTTGAATCTGACTTTGTT TCGGAGAATCTGCATCATTGGATAGATCTCATTTTTGGATATAAACAGAGAGGGAAGGCAGCGGAGGAAGCTGTTAATGTTTTCTATCATTACACGTATG AAGGAAGTGTTGATATTGATTCAGTTGCAGATCCTGCTATGAAAGCTTCTATTCTGGCACAAATTAATCATTTTGGGCAAACACCCAAACAATTGTTCCT CAAACCCCATGTGAAAAGGCGGACAGATAGAAAGCTTCCTCCTCATCCCCTGAAGTATTCATCCTATCTTGTTCCACATGACGTTCGAAAGAGCTCCTCT TCAATAACTCAGATTGTCAGTTATCACGATAAAGTTCTCGTGTCTGGGTCAAACAGCTTGCTTAAACCTAGAACATATACCAAGTGTATCTCATGGGGTT TCCCCGACCGCAGTCTGAGATTCACTAGCAGCGATCAAGAGAGACTTCTCTCAACACATGAGAATCTTCATGGTGGCAATCAGATTCAGTGTGTCGGTGC TAGTCATGATGGCCAGACATTGGTTACCGGTGCAGATGATGGTTTAATTAGTGTCTGGAGAATCATTAACGATAGTCCACGGGTGTCTCAACGCCTAGAG TTAGAAAAGGCTCTTTGTGGTCACACAACCAGAATTTCGTGCCTTCATGTTAGCCAGCCATATATGCTGATCGTGAGCGGGTCTGAGGATTGCACAGTTA TCATGTGGGACCTTAGCGGCTTGGTCTTTATCAGGCAGCTACCCGAATTCCCAGTTCCTGTCTCGGCGGTATTTGTGAATGACTTGACAGGGGAGGTAAT GACTGCCGCTGGGATTTTACTAGCTATTTGGAGCATTAATGGTGATTGTCTTGCCACGATTAACACTTCCCAACTGCCTTCGGATTCCATCCTGTGCGTG ACTAGCTGTACATTCTCGGATTGGCTGGATATGAACTGGTATGTGACTGGTCATCAGAGTGGGGCTATAAAGGTGTGGCAAATGGTCCATTGTTCCGACA AGGAGAAGATCAAATCTGCCTCCAACTCAACAACCGGGTTGAATTTAGGAGACAAGGTGCCAGAGTACCGGTTGATCCTGCACAAGATATTGAAATCTCA TAAGCATCCAGTCACCGCCCTTTACGTTACAAGCGACCTAAAGCAGTTGCTGAGCGGGGATTCTGGCGGGCATTTGGTCTCTTGGACCTTACCAGATGAT AGCCTGAGAAATTCATTGAACAACGGGTGA
AA sequence Show only first row Show all	>Lus10018744 pacid=23176280 polypeptide=Lus10018744 locus=Lus10018744.g ID=Lus10018744.BGIv1.0 annot-version=v1.0 MGGEASAPAAATSVLRFMVDLAKMSPAFSAVCRRTEFLESCIDLYFSCIRAAYAIKMARVLSEKAEDKNFNDFDDAGSSQNAFSSMPHEQAHSVKTSISG GSFPQAPASTSSEDMRGPQNYTDDDKADRTITNTKLDPEKLNEECVRMADGETADKFSHTSSSNEVTVHNTDDTVDGTRQADSQSSASLTIFDSPVISEK SSMKVAFTPSLSPAIVLHSAMSGVNQSEYKSVPLSPSVESCVSVSEYDSYTDLKPSSQGSLATNASSTVSAQLLLEIDDSGYGGGPCSAGATAVLDFVAE VLSELFTEQMKAAQAIEGILEMAPLYVDAESMLVFQGLCLSRLMNFVERRLLRDDEEDEKKLDKTLWTSNLDALCWMIVDRVYMGAFPQPGDVLRTVEFL LSMLQLANKDGRIEEAAPVGKGLLFTRGSKQLDAFILSLLKNTNRMILYCFLPTFLVSIGEEDHLSSLGLLAEPKQRPPSTSSQDDPGTDITTVLQLLVA HRRILFCPSNLDTEVNCCLCINLVALLHDQRQSVQNVAIDILKYLLVHRRAALEDLLVAKPNQGQQIDVLHGGFDKLLTGNLSVFFHWFDSSEHLVNKVL EQCASIMWVQYVAGSAKFPGVRIKGMESRRKREIGKRSRDISKLDLRHWEQANERRCALDMVRDAMSTELRVVRQDKYGWVLHAESEWQTLVQQLVHDRG IFPMRKSSVTEDPEWQLCPIEGPYRMRKKLERCKLKIDTVQNVLDGEFELGETELSKTKHDNGIDDSDTDSELFFNLLTEDDNLTGEDSEMYGETFKDAV GPKGVASVKSGWNDDKTSSVNEPSLHSAQDFGVKSNAYSVPVSESMQEKSDLGSPRQSSTNRTDDGKVIDDKSDKELTDNGEYLIRPYLDHLEKIRFKYN CERVVGLDKHDGIFLIGEFSWYIIENFFIDENGCICEKESEDELSVIDQALGVKKDAMSSMDFQSKSSASWTTTVKACSGGRAWAYNGGAWGKEKVGNSV NLAHPWHMWKLNSVHEILKRDYQLRPVAIEVFSMDGCNDLLVFHKKEREEVFKNLIAMNLPRNSMLDTTISGSATQESNEGSRLFKLMAKSFSKRWQNGE ISNFQYLMHLNTLAGRGYSDLTQYPVFPWVLADYESESLDLFNPKTFRQLDKPMGCQTVEGEEEFKKRYESWDDPEVPKFHYGSHYSSAGIVLFYLVRLP PFSTENQKLQGGQFDHADRLFNSIRDTWFSAAGKGNTSDVKELIPEFFYIPEFLENRFNLDLGEKQSGEKVGDVTLPPWAKGSVREFIRKHREALESDFV SENLHHWIDLIFGYKQRGKAAEEAVNVFYHYTYEGSVDIDSVADPAMKASILAQINHFGQTPKQLFLKPHVKRRTDRKLPPHPLKYSSYLVPHDVRKSSS SITQIVSYHDKVLVSGSNSLLKPRTYTKCISWGFPDRSLRFTSSDQERLLSTHENLHGGNQIQCVGASHDGQTLVTGADDGLISVWRIINDSPRVSQRLE LEKALCGHTTRISCLHVSQPYMLIVSGSEDCTVIMWDLSGLVFIRQLPEFPVPVSAVFVNDLTGEVMTAAGILLAIWSINGDCLATINTSQLPSDSILCV TSCTFSDWLDMNWYVTGHQSGAIKVWQMVHCSDKEKIKSASNSTTGLNLGDKVPEYRLILHKILKSHKHPVTALYVTSDLKQLLSGDSGGHLVSWTLPDD SLRNSLNNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	0	1
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	6.0	0.8966
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	6.4	0.9111
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024136 [exp]	9.3	0.8025
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	10.0	0.9071
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	10.1	0.8396
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	13.0	0.8993
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	13.0	0.8887
AT3G12010			unknown protein		Lus10021085 [exp]	14.4	0.7882
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	16.6	0.8884
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10033317 [exp]	17.9	0.8176

Compare expression of checked genes

Lus10018744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.