Plant FIBer expression Database

Lus10018745 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G63390 77 / 4e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024829
[exp]
222 / 1e-74 AT3G63390 135 / 4e-40 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G047400
[exp]
99 / 4e-26 AT3G63390 155 / 2e-48 unknown protein
PFAM info
Representative CDS sequence
>Lus10018745 pacid=23176183 polypeptide=Lus10018745 locus=Lus10018745.g ID=Lus10018745.BGIv1.0 annot-version=v1.0
ATGAATTCCTCCTCCTCCTCAATCCCGCCGGACCTCGACGACTACTCTGCAGCCACCACCACCATCCTCTTTGACACCCCAATCCCACTCCTCCGTGGTC
CAGCACCAGCCTCCGCATCCGACGACCTTTCCCTGGGTCCGTATGTCCTCGCCTTCAGAAACCCGCAATCCTGGTCATCCGCCTACGCCGCCTGCGAATC
CAACATCGCCAAGCAGTGCGACGAAGGGTTGGCGAAGGAGATGTGCTCGAAGCCTTGTCGAGATGCGAGGGTTGTTGTGGCGGCGGAGGAGAAGGAGAAG
GCGAGGGCGGAGATTGGGAAGAAATTGATTGGATTGGTATCGGCGCCGGTGAAGGGGTTACGGCGGATGATTGGGATCATGGAAGTGGAAGAGAGTAGTG
GATTGCGTGGTGCTGTAGGTTGTAAAAAGGCTAGCGAGCTGCTGGGTTCTGATCCCAATTATCTGTGGTTCTTCCAGAAATCCTGA
AA sequence
>Lus10018745 pacid=23176183 polypeptide=Lus10018745 locus=Lus10018745.g ID=Lus10018745.BGIv1.0 annot-version=v1.0
MNSSSSSIPPDLDDYSAATTTILFDTPIPLLRGPAPASASDDLSLGPYVLAFRNPQSWSSAYAACESNIAKQCDEGLAKEMCSKPCRDARVVVAAEEKEK
ARAEIGKKLIGLVSAPVKGLRRMIGIMEVEESSGLRGAVGCKKASELLGSDPNYLWFFQKS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G63390 unknown protein Lus10018745
[exp]
0 1
AT3G25810 Terpenoid cyclases/Protein pre... Lus10031352
[exp]
14.8 0.7135
AT5G45890 SAG12 senescence-associated gene 12 ... Lus10020723
[exp]
15.1 0.6711
AT3G23920 BAM1, BMY7, TR-... BETA-AMYLASE 7, beta-amylase 1... Lus10023700
[exp]
17.1 0.6382
AT3G18590 AtENODL5 early nodulin-like protein 5 (... Lus10022318
[exp]
22.3 0.7061
AT1G79800 AtENODL7 early nodulin-like protein 7 (... Lus10018758
[exp]
24.1 0.6738
AT1G31790 Tetratricopeptide repeat (TPR)... Lus10037287
[exp]
30.9 0.6179
AT5G51980 C3HZnF Transducin/WD40 repeat-like su... Lus10010819
[exp]
32.8 0.6599
AT3G52080 CHX28 cation/hydrogen exchanger 28 (... Lus10019716
[exp]
35.2 0.6653
AT3G16970 Plant self-incompatibility pro... Lus10030565
[exp]
41.1 0.6387
AT2G23570 ATMES19 ARABIDOPSIS THALIANA METHYL ES... Lus10020004
[exp]
45.1 0.6434

Lus10018745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.