Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63400 249 / 2e-76 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT3G56070 192 / 8e-58 ROC2 rotamase cyclophilin 2 (.1.2) AT2G21130 190 / 9e-57 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 186 / 3e-55 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT4G38740 184 / 9e-55 ROC1 rotamase CYP 1 (.1) AT2G16600 179 / 9e-53 ROC3 rotamase CYP 3 (.1.2) AT2G29960 177 / 8e-52 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT3G55920 177 / 3e-51 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G58710 176 / 4e-51 ROC7 rotamase CYP 7 (.1) AT2G15790 179 / 1e-50 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024831 [exp] 353 / 1e-112 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10007579 [exp] 192 / 9e-58 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10022012 [exp] 192 / 2e-57 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10020992 [exp] 197 / 8e-57 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10042553 [exp] 190 / 1e-56 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10012167 [exp] 188 / 5e-56 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10023860 [exp] 192 / 3e-55 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10017258 [exp] 179 / 1e-52 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10027924 [exp] 181 / 3e-51 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215800 [exp] 269 / 1e-80 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G047200 [exp] 261 / 2e-77 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.009G130100 [exp] 194 / 1e-58 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 192 / 1e-57 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.005G240200 [exp] 189 / 1e-56 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 189 / 3e-56 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 188 / 4e-56 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.004G144300 [exp] 187 / 4e-53 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G106200 [exp] 186 / 9e-53 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 184 / 2e-52 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10018746 pacid=23176195 polypeptide=Lus10018746 locus=Lus10018746.g ID=Lus10018746.BGIv1.0 annot-version=v1.0 ATGAACAATAAGAAAAACCCATCCGTATTTTTCGATGTATCGATTGACAAAGGTCCCGTGGAAAGAATTGTTATTGAGCTTTTTGCTGATGTTGTTCCAA AGACTGCAGAAAATTTTAGGGCGCTGTGCACAGGAGAGAAGGGCACTGGCAGTACTACTGGGAAACCTCTGCATTACAAAGGAACTTCTTTCCATCGAAT AATTAAAGGGTTCATGGCACAGGGTGGTGACTTTTCAAAGGGAAACGGAACTGGTGGAGAAAGCATCTACGGAGGGAAATTTTCAGATGAGAACTTCAAG TTAAAGCATGATGGACTGGGTTTTCTTTCAATGGCAAATAGTGGCCCAAACACCAATGGTTCTCAATTTTTCATTACCTTTAAGAGCCAACCTCACCTTG ATGGGAAACATGTTGTTTTTGGGAAGGTTGTTAAAGGATTGGATATACTGAAGAAAATTGAACAGGCAGGAACGGCTAAAGGGGACCCTCTTCAATCTGT GAGAATTGCAGACTGTGGTGAAACTTCTGAGAGTTCTCGTGCTGTGGTGAAGGATACAGGGAAAGATAAAAAATTAGCAAAGGTCACTTCTGATGATAGC TCCGAAGGAGATATTAAACGCGGACGTAAGAAGTCGTTGAAGGATAGAAGGAAGAGGAGAAGAAAGAGATACTCTTCATCCGATTCATACAGCTATGATT CCGAGTCAGAATCTTTAGACTCAGATTCTGAATCTTCAGACTCGGATTCCTCGTCACTTGATTCAAGTTCTAGTGATGGGAGACGCAAGAAGAGGAAGTA TTTGAAAAGAGATAAACTCCGTGGAAAGAGGAAAAAGAGTGGCAGGAGAAGGGATAAGAAGAAGAGTAGGCGTGATAAAAGATCCAGGCGCAAGTCGAAA AGGAGTTCTGATAGCTGTAGTGATTCTGCATCTGAGAGTAGCAGCAGCAGTTCTGAAGATGATAAAGCTGATCGCCATATTCCACGTAAAAGCAGCAAGT CTACTATTGCTGACAAGTCGGACGGTCTAGAGAAAGCTAAGGGAGACAAAGGGAATGAAAAACAGAAGATGGCTGAAGTGAATTCTCAACACGAAGAAGG AGAATTGTCTCCAAATAATGGAAACCTTCTGAATGGGAATGATTCCAAATCTGACAGAAACATTAAGCGGAGCTCTTATTCTGACAACTCGGACAAATCT AGGAGTGTCACTCCAAGCCCTCCAAGGAGGCCAAACAACAGCCATAGGAGTAAACGAGGGGGGAGTCCTGAAAAAACTTCTCCAACTCCAAGGATTTCAA GGACTCCAGTGCGCAGTCCTGCTGGTAGGGCTCCTGAACCTCTTACCTCCAACCAAGGGAGGAATGTTTCACGAAGCCCATCCCCAAATGGCGTTCCCAA ACGCGTTAGAAAAGGAAGAGGCTTTACTGAACAGTATTCATTTGCTCGTCGATACCGTACCCCTTCTCCGGAGGGTTCACCTCCTAGAAGGTCTTTCTAC TATGGCGGTAGAAATGTCAATGATAGGAACCGTGATAGGTACTCAGGCAACCGGAATTATCCGGCGCGCTCATCATATGGACGGTACAGAAGCCCACCAA GAGGCAGGAGTCCACCTAGATATGGAAGTCGGAGAAGTCGAAGTAGGAGCAGATCTCGCAGCCCAAGAAACTATCGCGAGCGGAACAGAGGTCGCAGCAG AAGCCAGAGCCCTGTTCAAAGTCCTAGTCCAAAAGACATGCGGCCTCCTGTCGTTGACGGTTTGAAATCTCGTCTCGGCCCTCGAATTGATGATGACCAA TCAAGGAGGAGTGAAGGAAGATTAAGGTCAAGGAGCAGGTCATCTTCCCTTTCGAAATCTCCAGATGCTGCACCACCAAAACGGCGCGGCAGAACAACTA GTAGGTCCAGGTCGAGCTCGCTGTCAGGAGAACAGCAAGGTCTAGTTTCATATGGGGATCCCAGCCCTGACAAGTGA
AA sequence Show only first row Show all	>Lus10018746 pacid=23176195 polypeptide=Lus10018746 locus=Lus10018746.g ID=Lus10018746.BGIv1.0 annot-version=v1.0 MNNKKNPSVFFDVSIDKGPVERIVIELFADVVPKTAENFRALCTGEKGTGSTTGKPLHYKGTSFHRIIKGFMAQGGDFSKGNGTGGESIYGGKFSDENFK LKHDGLGFLSMANSGPNTNGSQFFITFKSQPHLDGKHVVFGKVVKGLDILKKIEQAGTAKGDPLQSVRIADCGETSESSRAVVKDTGKDKKLAKVTSDDS SEGDIKRGRKKSLKDRRKRRRKRYSSSDSYSYDSESESLDSDSESSDSDSSSLDSSSSDGRRKKRKYLKRDKLRGKRKKSGRRRDKKKSRRDKRSRRKSK RSSDSCSDSASESSSSSSEDDKADRHIPRKSSKSTIADKSDGLEKAKGDKGNEKQKMAEVNSQHEEGELSPNNGNLLNGNDSKSDRNIKRSSYSDNSDKS RSVTPSPPRRPNNSHRSKRGGSPEKTSPTPRISRTPVRSPAGRAPEPLTSNQGRNVSRSPSPNGVPKRVRKGRGFTEQYSFARRYRTPSPEGSPPRRSFY YGGRNVNDRNRDRYSGNRNYPARSSYGRYRSPPRGRSPPRYGSRRSRSRSRSRSPRNYRERNRGRSRSQSPVQSPSPKDMRPPVVDGLKSRLGPRIDDDQ SRRSEGRLRSRSRSSSLSKSPDAAPPKRRGRTTSRSRSSSLSGEQQGLVSYGDPSPDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	0	1
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Lus10026157 [exp]	4.0	0.9369
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	4.1	0.9410
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10036607 [exp]	4.9	0.9287
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019208 [exp]	5.0	0.9362
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	8.8	0.9398
AT5G41190			unknown protein		Lus10001487 [exp]	9.1	0.9407
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	10.6	0.9264
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	12.0	0.9228
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	16.7	0.9263
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	19.5	0.8625

Compare expression of checked genes

Lus10018746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.