Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63410 483 / 1e-170 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G57300 43 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024832 [exp] 634 / 0 AT3G63410 494 / 5e-177 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014711 [exp] 447 / 3e-157 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003095 [exp] 141 / 1e-40 AT3G63410 136 / 1e-40 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004090 [exp] 100 / 1e-24 AT3G63410 98 / 6e-25 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013038 [exp] 43 / 0.0003 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 42 / 0.0006 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047100 [exp] 557 / 0 AT3G63410 508 / 0.0 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G215900 [exp] 538 / 0 AT3G63410 492 / 3e-176 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G159400 [exp] 511 / 0 AT3G63410 461 / 6e-164 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10018747 pacid=23176192 polypeptide=Lus10018747 locus=Lus10018747.g ID=Lus10018747.BGIv1.0 annot-version=v1.0 ATGGGCAAACAAATCTTGTTCATTCACAAGATAACAACACTAATAATAATAATAAATGAACAAACTTTGCTAACCGTCCAATACGCACCACAGAGTTTCC TTCCTTTGTCGTCTCATCAGTCATCACTTGTCACTCCCAAATCCGGACCGGAACCCCCAAAGCCACTCATCACTAGTTTCTCTCTTCTTCTCTCTACAGC CACAAATTGCCAGCATTTCTCCGCTACTGTAACTCGGGGGGATTTCTTCCGGTATCTCGGACCTGGGTTTTCATTTCCGGTCATCAATTTCCTTCCTTCA TTACTTTCTGAGGTTGATTTTGATCCCAACGTCCGTTTAATGAATCCAATAATGGCGTCTTCGATTGTGAACGGGGCTGAAAGCTTCGCGCTCCTTAGAG GAGTCAATGGCGTAACCCCAAGAGGATTAGGTTTCGTGGGTTCAGATTCCCACGGCAAGAACTTCCCTAAATTGAATACGCTATCCATGAATAGAATCCC TAGGATCAGTACTAGTACTAGCAGAAGAACAACAACAATGGCTCCCGGTACTCCCACGTGTGACTTATCATCATCTGCTGCATCATCATCCTCCAGGCCG GCTTCCCAGCTAAGGCTTATCCAGCACAAGCAGGAGGCATTTTGGTTCTACAGATTCCTGTCCATTGTGTATGACCATGTGATAAACCCGGGTCACTGGA CTGAGGACATGAGGGACGATGCCCTCGAGCCCGCTGACCTCAGCGACAGGAGAATGCTTGTGGTGGATGTTGGTGGTGGCACTGGCTTCACCACTCTGGG GATTGTGAAGCATGTCGACGCGAAGAATGTCACAATTCTCGATCAGTCTCCTCATCAGCTGGCCAAGGCTAAGGAGAAGGAGCCTCTTAAGGATTGTAAG TTTGTGCTTGGTGATGCTGAAGATTTGCCCTTTAAGACTGATTATGCGGACAGATATGTCTCAGCTGGGAGCATTGAGTACTGGCCCGACCCACAACGTG GCATCAGAGAGGCATACAGGGTCTTGAAGCTGGGAGGCAAAGCCTGTTTGATCGGTCCGGTTTATCCTACATTTTGGCTATCTCGCTTCTTTGCGGATGC CTGGATGCTCTTCCCCAAGGAAGAAGAGTACATCGAGTGGTTTACAAAGGCCGGGTTTAAAGATGTTCAGCTGAAGCGGATTGGCCCAAAGTGGTATCGC GGTGTTCGTCGACATGGGCTTATCATGGGATGTTCTGTCACAGGTGTTAAACCTGCATCTGGAGATTCTCCTTTGGAGCTTGGTCCGAAGGCTGAGGATG TGTCGAAGCCGGTAAAACCGTTTGTTTTCCTGGCGCGGTTGATTTTGGGGGCAATGGCTGCAACATATTATGTGTTGGTACCAATCTACATGTGGATCAA AAACCTAATAGTCCCCGAAGGAATGCCAATATGA
AA sequence Show only first row Show all	>Lus10018747 pacid=23176192 polypeptide=Lus10018747 locus=Lus10018747.g ID=Lus10018747.BGIv1.0 annot-version=v1.0 MGKQILFIHKITTLIIIINEQTLLTVQYAPQSFLPLSSHQSSLVTPKSGPEPPKPLITSFSLLLSTATNCQHFSATVTRGDFFRYLGPGFSFPVINFLPS LLSEVDFDPNVRLMNPIMASSIVNGAESFALLRGVNGVTPRGLGFVGSDSHGKNFPKLNTLSMNRIPRISTSTSRRTTTMAPGTPTCDLSSSAASSSSRP ASQLRLIQHKQEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSDRRMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKEKEPLKDCK FVLGDAEDLPFKTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADAWMLFPKEEEYIEWFTKAGFKDVQLKRIGPKWYR GVRRHGLIMGCSVTGVKPASGDSPLELGPKAEDVSKPVKPFVFLARLILGAMAATYYVLVPIYMWIKNLIVPEGMPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10018747 [exp]	0	1
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	1.7	0.9284
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	2.6	0.9398
AT3G25805			unknown protein		Lus10022435 [exp]	4.9	0.9352
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	5.7	0.9251
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	6.3	0.9236
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	7.2	0.9147
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	8.8	0.9158
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	10.4	0.9226
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	10.6	0.9222
AT5G17870		PSRP6	plastid-specific 50S ribosomal...		Lus10007237 [exp]	10.7	0.9105

Compare expression of checked genes

Lus10018747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.