Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 506 / 2e-177 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24290 96 / 7e-21 AMT1;5 ammonium transporter 1;5 (.1) AT3G24300 90 / 5e-19 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT4G13510 73 / 1e-13 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT1G64780 73 / 1e-13 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 67 / 1e-11 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024833 [exp] 883 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 789 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 788 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 635 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 634 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 605 / 0 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 555 / 0 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 508 / 7e-178 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 472 / 2e-164 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047000 [exp] 714 / 0 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 689 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 635 / 0 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 598 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 516 / 0 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 504 / 5e-177 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 501 / 2e-175 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 499 / 1e-174 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 491 / 4e-171 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 486 / 2e-169 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10018748 pacid=23176243 polypeptide=Lus10018748 locus=Lus10018748.g ID=Lus10018748.BGIv1.0 annot-version=v1.0 ATGGCGGACGTCCTGCCACTAAACCTCGCCACCGACGAGGGCAGCCCGGACTGGCTCAACAAAGGCGACAACGCATGGCAGCTCAACGCCGCCACGCTAG TAGGGATGCAGAGCGTCCCGGGGCTCGTAATCCTCTACGGAAGCATCGTCAAGAAGAAATGGGCGGTAAACTCGGCGTTCATGGCGCTCTACGCCTTCGC TGCCGTCCTGATCTGCTGGGTCGGGTGGGGTTACCAGATGGCGTTCGGAGACCACTTCGTTCCCTTTTTGGGGAAGCCTGACGTGGCGCTCGATCAGAAG TTTCTGCTGAGTAGGACGTTTGTTGGGTACTTGCCCAACGCGACGATGATTTATTTCCAGTTTGTTTTCGCGGCGATTACTTTGATTCTGATCGCTGGTG CTTTGCTTGGGAGGATGAATTTCCATGCGTGGATGATTTTTGTTCCGCTGTGGCTGACGTTTTCCTACACGGTGACTGCTTATAGTATTTGGTGTCCTAC TGGGTGGCTTTATAAGAAGGGGATTATTGATTACTCCGGCGGGTATGTTATTCACTTATCCTCCGGCGTCGCAGGGTTCACCGCCGCTTACTGGGTGGGA CCGAGGGCGAGCAAAGACAGGGAGAGGTTCCCGCCGAACAACATACTCCTGATGTTGGCCGGAGCAGGGCTACTATGGATGGGATGGACAGGATTCAACG GTGGAGATCCTTATACAGTCAGCATCGATGCTTCTCTCGCCGTACTCAACACTCACGTCTGTACTGCCACCAGCTTGCTTGTGTGGCTTCTTCTTGACAT CATGTTCTTCGGCAAACCCTCCGTCATCGGAGCCATCCAGGGCATGATCACCGGCCTCGTCTGCATCACTCCCGCCGCCGGAGTTGTACAAGGATGGGCG GCGATCCTGATGGGAATAATGTCGGGAAGCATCCCATGGTACACAATGATGGTCCTCCACAAAAAAATATCCCTCCTCAAACACATCGACGACACAATGG CAATCTTCCACACCCACGCCGTCGCCGGCAGCCTCGGCGGGATCCTTACCGGAATCTTCGCCGAGCCCAAGCTCTGCCGCATCTTCTACCTCGTCCCGGA TTGGCAACACTACATCGGCCTCCTCAACGGCTTCCACAACGGCACACCGGGGGCTGGGTTCAAGCAGCTGGGAATCCAGCTCCTCGGGATCCTCTACGTC GTCTGCGTCAACGTCGTGATTACCAGCGTCATCTGTTGGCTGATTAAGTTCGTGGTGCCATTGCGGCTGTCGGAGGAGGAGCTCAGCGTCGGAGATGACG CCATCCACGGGGAAGAGGCGTACGCGCTGTGGGGAGATGGAGAGAAGTATGAATCGGCGAGTAGGCATACTTCGTTTTACGGAGCTGATCAGGATATTCC GCCGCCAGGGAAGGGTGAATCCGCCGCCGGTGGAGGACATGTTGAGATGGCTTAA
AA sequence Show only first row Show all	>Lus10018748 pacid=23176243 polypeptide=Lus10018748 locus=Lus10018748.g ID=Lus10018748.BGIv1.0 annot-version=v1.0 MADVLPLNLATDEGSPDWLNKGDNAWQLNAATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLICWVGWGYQMAFGDHFVPFLGKPDVALDQK FLLSRTFVGYLPNATMIYFQFVFAAITLILIAGALLGRMNFHAWMIFVPLWLTFSYTVTAYSIWCPTGWLYKKGIIDYSGGYVIHLSSGVAGFTAAYWVG PRASKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSIDASLAVLNTHVCTATSLLVWLLLDIMFFGKPSVIGAIQGMITGLVCITPAAGVVQGWA AILMGIMSGSIPWYTMMVLHKKISLLKHIDDTMAIFHTHAVAGSLGGILTGIFAEPKLCRIFYLVPDWQHYIGLLNGFHNGTPGAGFKQLGIQLLGILYV VCVNVVITSVICWLIKFVVPLRLSEEELSVGDDAIHGEEAYALWGDGEKYESASRHTSFYGADQDIPPPGKGESAAGGGHVEMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10018748 [exp]	0	1
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10021664 [exp]	2.8	0.8216
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	8.4	0.7779
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	11.5	0.7877
					Lus10033430 [exp]	14.8	0.6511
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	16.0	0.7803
AT3G50990			Peroxidase superfamily protein...		Lus10030940 [exp]	18.3	0.7191
					Lus10003493 [exp]	23.0	0.8040
					Lus10011203 [exp]	24.0	0.7665
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10035453 [exp]	29.3	0.8029
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	31.2	0.7875

Compare expression of checked genes

Lus10018748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.