Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20030 108 / 3e-27 Plant Tudor-like RNA-binding protein (.1) AT4G32440 69 / 7e-13 Plant Tudor-like RNA-binding protein (.1.2.3) AT3G12140 46 / 2e-05 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G13020 46 / 2e-05 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 45 / 5e-05 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT5G06780 44 / 9e-05 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT1G09320 42 / 0.0006 agenet domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024835 [exp] 548 / 0 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10014715 [exp] 275 / 6e-91 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10003091 [exp] 271 / 9e-90 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10000040 [exp] 47 / 2e-06 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10037805 [exp] 49 / 3e-06 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10017088 [exp] 48 / 8e-06 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10002437 [exp] 46 / 3e-05 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10021038 [exp] 45 / 3e-05 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10004188 [exp] 45 / 4e-05 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216200 [exp] 242 / 8e-78 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 212 / 7e-66 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 86 / 1e-18 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.006G250600 [exp] 82 / 2e-17 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.001G173900 [exp] 69 / 4e-13 AT4G32440 208 / 2e-63 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.016G047600 [exp] 48 / 5e-06 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 48 / 5e-06 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G011100 [exp] 46 / 2e-05 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 45 / 3e-05 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.001G013800 [exp] 45 / 3e-05 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10018749 pacid=23176231 polypeptide=Lus10018749 locus=Lus10018749.g ID=Lus10018749.BGIv1.0 annot-version=v1.0 ATGAAGTTCAGGAAAGGGGATCTAGTGGAAATCCTCAGAAGAGAAAGCGAGAATGATGGTGGCTCATGGTTTCCAGGCCATGTACTTTCCGTACGGGAAA CTCATTTCCTGGTTATGTATGAATCCCTTGTGGTCAACGGTGATGAGGAGCCGTTGACGGAGAAGGTTTCCAAGCTTGATGTTAGGCCTAGGCCGCCTCT TAAGGAGGAAGGGAAGCGGAAATGGAAGGTTGGTGATGTAGCTGAAGTGTTTGACGTTAAGTGCTGGAGGATTGGGAAAATCGTCAAGGCATTGAAGAAT AAGAAGAACAAGTTTGTTGTCAAACTATCTGGGTTCATTCAGCTCAAGGAGTTCCATGTTTCTGATCTTAGGGTGCAGCAGGTCTGGCATAAGAACAAGT GGTTCTTGATAGGCAAGGATGCTCAATGTCCCATACCCCGAGTTTCGTGCTTAACAGCGAAAGATAATAACTTTGTCGTGCAAGATAACAACGATCGAAC GAAAAGGTCTTCAAAGGATCTCGTAATTCGTATGCCAGGTTTTCATCAGAGTTCTATAGAACATAATAACAATGTTCATCATGATGCGGAAGTAGCAAGT GCTCGCTTGTTTGACGAAGCTAGCTACCAGCAGTGCTCTGTGGCTAGCTGTAGCTCAAACGATTTCGCCTATTCTCGCGATCACGACTTTCATCATCCAT CATCCGTGTCGGAGAACTCAGATGCTGAGTCCTCCTTCCCATCTGCTAAAAAACAAAACTACGGAAAGAATGTGGAGGCTGACATTCATGCATTGGAGTT CCATGCTTACAGGTCAACGGTGAAAGCGTTGTATGCTTCGGGTCCTTTGAGTTGGGAGCAAGAGCTGCTCTTGTCTAATCTTCGACACTCTCTTCATATT TCAGACGAAGAACACCTGTTCCAGCTGCGGCATCTGTTGTCAACCCAGGTTCTTTAG
AA sequence Show only first row Show all	>Lus10018749 pacid=23176231 polypeptide=Lus10018749 locus=Lus10018749.g ID=Lus10018749.BGIv1.0 annot-version=v1.0 MKFRKGDLVEILRRESENDGGSWFPGHVLSVRETHFLVMYESLVVNGDEEPLTEKVSKLDVRPRPPLKEEGKRKWKVGDVAEVFDVKCWRIGKIVKALKN KKNKFVVKLSGFIQLKEFHVSDLRVQQVWHKNKWFLIGKDAQCPIPRVSCLTAKDNNFVVQDNNDRTKRSSKDLVIRMPGFHQSSIEHNNNVHHDAEVAS ARLFDEASYQQCSVASCSSNDFAYSRDHDFHHPSSVSENSDAESSFPSAKKQNYGKNVEADIHALEFHAYRSTVKALYASGPLSWEQELLLSNLRHSLHI SDEEHLFQLRHLLSTQVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	0	1
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10030252 [exp]	2.8	0.9252
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	3.2	0.9289
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	3.9	0.9320
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	4.2	0.9457
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	4.6	0.9261
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10010851 [exp]	6.2	0.9050
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	6.2	0.9335
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	6.9	0.9302
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	7.7	0.9210
AT3G19460			Reticulon family protein (.1.2...		Lus10014102 [exp]	10.2	0.9093

Compare expression of checked genes

Lus10018749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.