Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63430 243 / 7e-71 unknown protein AT3G02170 91 / 1e-18 LNG2 longifolia2 (.1) AT5G15580 87 / 3e-17 LNG1 longifolia1 (.1) AT1G74160 68 / 2e-11 unknown protein AT1G18620 52 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024836 [exp] 1402 / 0 AT3G63430 246 / 3e-72 unknown protein Lus10014716 [exp] 956 / 0 AT3G63430 227 / 2e-65 unknown protein Lus10003090 [exp] 904 / 0 AT3G63430 236 / 1e-68 unknown protein Lus10021612 [exp] 101 / 2e-24 ND / Lus10017857 [exp] 64 / 4e-10 AT1G74160 752 / 0.0 unknown protein Lus10034678 [exp] 58 / 3e-08 AT1G74160 594 / 0.0 unknown protein Lus10034677 [exp] 52 / 9e-07 AT1G74160 182 / 1e-51 unknown protein Lus10021148 [exp] 49 / 1e-05 AT1G74160 236 / 9e-69 unknown protein Lus10042850 [exp] 49 / 2e-05 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046700 [exp] 860 / 0 AT3G63430 327 / 8e-103 unknown protein Potri.005G216300 [exp] 803 / 0 AT3G63430 245 / 3e-72 unknown protein Potri.015G058900 [exp] 62 / 2e-09 AT1G74160 795 / 0.0 unknown protein Potri.017G095000 [exp] 59 / 2e-08 AT1G74160 399 / 3e-122 unknown protein Potri.012G061900 [exp] 58 / 3e-08 AT1G74160 730 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018750 pacid=23176272 polypeptide=Lus10018750 locus=Lus10018750.g ID=Lus10018750.BGIv1.0 annot-version=v1.0 ATGACCGGGGTTGTTCACGAACAGAACCTTGAGAAGCAGATTGAGAAGCAAATGGGGTGCATGGCTGGCTTCCTTCAGATCTTTGATCGTCATCAGATTC TCACCGGAAAACGCCTCTGCTCTAACAAACGCCTTCCTCCTTCCGCGGTAGCTGATTCGGCTTCGGAGCCGGAAAAGCCGGTTGGTTCTCCGACGATAGT CTTGCCGGAATCGGAGAAGCAGCATCAGTTTGAACCGAGATCTATTCCTTCGCCGGATAAGTTCAAGCAATCTCCAGTGGTGGTGGTGTCGGCTCCTCGT TCGCCGGCGCCGGAAGTTGTGACTCCCGTCGGTACTCCTACCAAATCGCCTTTGCCACTTCCGGTCTTCCAAGGCACAAAATCGTCGATGTGGAAGTTCG GGAAAGAGACTCCGAGGCTGTCACTGGACAGTAGAGCCACAGTGGATGCGAAAGGAAGGCTTAAGCCTAGAGAGCTTCGGACTAGCGCATCGATGCCGAC GACGAATCGGGAGAAGAACGGTGGGGAAGAATCCGACGGTAATGACAAAGATCAGAATCGATCTCCTAGCGTAATTGCGAAGTTGATGGGGCTGGAGCGG TTGCCGGAATCGGATCCAGAAGAGGCAGAGATCAAGCAGCCCGAATTACGAAGATCCGCTTCTGAGTCGAGAGCGAACAGAGATCTGCAACAGTACCGAT TCATTGACGGCGTTAATTTCCAGCTGAAGCAGTCCTTGCAAGCCAATCATCAGCAAAATGTGCAGAGCAATCTGCAAAGTAAAATGGTGAGAGACTCGAT AGCCAAGGATCCAAAAGAGTACAATGCTGTACGGAAAGGTAGAATCGAAACAGGGAGGCAACAGCCAAACAGAGGAATAGGACTGAGGAAGTGCTTTTAC GACTCGGCAGATTTCTTTCCAGAGACGAAACAGAACGTTTCTATCTACGGCGAGATCGAGAAGAGGCTCAGAATGCGAGGGATCGATGAGCCATCCAAAG ATCTCGAGAAACTCAAACAAATCCTCGAGGCTCTGCAGCTGAAAGGCCTGCTTCATTCGAACAAGCCGCCGGCGAATCAATCCACCAGCCGAAACCTCGT GTATGATCCAAGCTTCGAGGATTCTCCCATCGTCGTGATGAAGCCGGCGAGATCAACGTCTCCAATGAGCAGGCAAGCGGCAAGAATCGGGAGCGATTCT CCGCCGGCGAGTTTCAGAGCCAGACCCGGCCTCCGGCGAGACTCCTGTTTCGAAACATCGCCGGTGACAAGATATAGGAGAGATAGTCCGGAGATTGAAA AGAACGCCAACGTCCGGACTGGTGCCAGAGGGAGGAATTCCAGTTCACTAACTCGAAGCGATAGTAGTGCCAAGAGTCCTGTAAGGAGACGACCACTGAA CATTGAAACGCAGAGAAGAATTGGGAATGATTCGGTAGAACAGAGACGAGTATCTCCGGTTCAGTCTCCCAGGATTGGGTCAAGAAGATCCGGACCGGAG CAACCAGCCAACCAGTCACCAAGAAACAGAAGGAGGCCGACGGAGATTCATCGGAAGGAGGATAGTAAGGTGTTCAGTCCCACAGAGGATGAATCCTCTA CGCTTTCAGAGAGCAGTTTTAGCGCCAATTCACAACTCGACATCGAGAGTTCCAAGGCGGAGGAATACAACAAAGATGGAAGACACATACTAGAGAGGTG CGATAAGCTTCTCCACAGCATAGCAGAGATGACGGCAGCCACCGCCGAGTTACAGCCGAGTCCAGTATCGGTACTGGACTCATCATTTTACAGGGAGGAA TCTTCTCCTTCACCAGTTATGAAACGTAACGTCGATTTCAAAGGGCAATCAACGGAATCAGAAGATGACATTTGGACCTGTCCGGCGCCGGAGTCATCCC AATCCGACGACTGCGAGTTCACCTACGTCTCCGACGTCCTCCGAGCCTCAACTTACTTACCGGAGGACTCCGACGTGTTCCTCCTTTTAGAGAAGCAGCA GTACCTCCGAGGGAAAGACACCTCCAAGGTGTCGAGACTGCAGAGGAGGCTCACCTTCGACACCATCAACGAAATCGTGAGCAAGAAGAAAGACCTGCCT CCTTGGAAAGCTGTTACCTCCTCCGTGGATCAAATCTGGTCGGAGTTCCAGAGGATCCAGGTGAAGGAATCGTCGAAGGAGGACCTTTTCGAGGTGATCT GCGGCGTGTTGAGGAAGGATTTGGCAGGGGATGCGGTGAACGCATGGGAGGATTGTCCGGTTGAGATGTCGGAAGCGGTGTTGGATATCGAAAGGCTTAT ATTTAAGGACTTGATCGGTGAGACCATCGGAGATCTTGCTGCTTTCGGCGGTAGATATAGCCACGCCCCCCGCCACCAAGCTGCTGCCTCCTCCTCTGCG TCGTACCTCCGCCGGAAGTTGGTGTTCTAA
AA sequence Show only first row Show all	>Lus10018750 pacid=23176272 polypeptide=Lus10018750 locus=Lus10018750.g ID=Lus10018750.BGIv1.0 annot-version=v1.0 MTGVVHEQNLEKQIEKQMGCMAGFLQIFDRHQILTGKRLCSNKRLPPSAVADSASEPEKPVGSPTIVLPESEKQHQFEPRSIPSPDKFKQSPVVVVSAPR SPAPEVVTPVGTPTKSPLPLPVFQGTKSSMWKFGKETPRLSLDSRATVDAKGRLKPRELRTSASMPTTNREKNGGEESDGNDKDQNRSPSVIAKLMGLER LPESDPEEAEIKQPELRRSASESRANRDLQQYRFIDGVNFQLKQSLQANHQQNVQSNLQSKMVRDSIAKDPKEYNAVRKGRIETGRQQPNRGIGLRKCFY DSADFFPETKQNVSIYGEIEKRLRMRGIDEPSKDLEKLKQILEALQLKGLLHSNKPPANQSTSRNLVYDPSFEDSPIVVMKPARSTSPMSRQAARIGSDS PPASFRARPGLRRDSCFETSPVTRYRRDSPEIEKNANVRTGARGRNSSSLTRSDSSAKSPVRRRPLNIETQRRIGNDSVEQRRVSPVQSPRIGSRRSGPE QPANQSPRNRRRPTEIHRKEDSKVFSPTEDESSTLSESSFSANSQLDIESSKAEEYNKDGRHILERCDKLLHSIAEMTAATAELQPSPVSVLDSSFYREE SSPSPVMKRNVDFKGQSTESEDDIWTCPAPESSQSDDCEFTYVSDVLRASTYLPEDSDVFLLLEKQQYLRGKDTSKVSRLQRRLTFDTINEIVSKKKDLP PWKAVTSSVDQIWSEFQRIQVKESSKEDLFEVICGVLRKDLAGDAVNAWEDCPVEMSEAVLDIERLIFKDLIGETIGDLAAFGGRYSHAPRHQAAASSSA SYLRRKLVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63430			unknown protein		Lus10018750 [exp]	0	1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	4.6	0.9125
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	5.8	0.9049
AT2G27060			Leucine-rich repeat protein ki...		Lus10025541 [exp]	8.1	0.8845
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	9.6	0.8667
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	11.7	0.8593
AT5G11560			catalytics (.1)		Lus10022144 [exp]	16.5	0.8887
AT5G17160			unknown protein		Lus10038036 [exp]	19.8	0.8939
AT3G63430			unknown protein		Lus10024836 [exp]	20.2	0.8924
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	20.5	0.8970
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	21.8	0.8875

Compare expression of checked genes

Lus10018750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.