Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03055 213 / 3e-68 unknown protein AT1G64680 147 / 9e-43 unknown protein AT4G01995 96 / 4e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024837 [exp] 446 / 1e-158 AT1G03055 229 / 1e-73 unknown protein Lus10017338 [exp] 162 / 8e-46 AT1G02800 390 / 1e-130 cellulase 2 (.1) Lus10001667 [exp] 150 / 2e-44 AT1G64680 339 / 1e-119 unknown protein Lus10012004 [exp] 99 / 6e-24 AT4G01995 283 / 9e-96 unknown protein Lus10016264 [exp] 82 / 1e-17 AT4G01995 215 / 3e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216400 [exp] 287 / 9e-97 AT1G03055 235 / 8e-77 unknown protein Potri.002G046500 [exp] 272 / 1e-91 AT1G03055 258 / 3e-86 unknown protein Potri.001G083300 [exp] 159 / 2e-47 AT1G64680 383 / 8e-136 unknown protein Potri.002G194500 [exp] 114 / 8e-30 AT4G01995 285 / 3e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018752 pacid=23176289 polypeptide=Lus10018752 locus=Lus10018752.g ID=Lus10018752.BGIv1.0 annot-version=v1.0 ATGTCCATCGTCCATACGACGTTGTATCCTCTTCTCCCAGCACGCACGAGTCGGAGTTTTCCTAGTGTAGTTCAAGCAGTGCTGTCCAGACCGTCGGAGA ATTTAGGCAGTAAGGAGAAGAAGATCAGCAAGAGCTTAGTACACGTTGCAACCACCACCGCTGACGATTTCTTGTCCACGGGGATATCATCGTCGCCCCC TCAGCAGCAGCAGCAGCCGACGAAGAAAACGGAGTATCATGACAACTGGCTGGAGGCTGCGGCGATTGACTACTTGTCACGCCACGTCCAAGAAGCAACC GGGGCGAGAAACGAGAAGAATGGCTACGAGAGTTTGGTGCAGGCGACGACAGACGTAACGAGGAAGTTCGACGTGAGTCAGCAGCGTCAGCTTGTGCTTC AGGCTCTTGCTGCCGCCATTCCTTCACCAATCCTTAACCTGGTACGGACGCTTCTTCCAAACTCTAAATTCAAAAGAGAGTATTTCGCTGCTTTCACCAC CGTCTTCTTCCCCTGGCTCGTTGGACCTTGTGAGGTACGGGAATCGGAGTTCAACGGGAGGAAAGAAAAGAACGTTGTCCACATCAAAAAGTGCAGGTTC TTGGAGCAGAGTAATTGTGTTGGGATGTGTAGTAATCTATGTAAAGTGCCATCTCAGACCTTTATCCAGGCCTCCTTAGGATTGCCCGTCAACATGGTTC CTAATTTTGATGACATGAGCTGCGAGATGATATTTGGAGAGGACCCCCCACCGTTGAATGAAGATCCGGCTTTCAAGCAACCATGCTCGAAACTATGTAT GTTCCCTTCTCATCACTTTACACGGGCCAAAGAAAAAAGGTGCAGTGTTTCTGCGTTAGTTTTCTGTCTCACATATTAG
AA sequence Show only first row Show all	>Lus10018752 pacid=23176289 polypeptide=Lus10018752 locus=Lus10018752.g ID=Lus10018752.BGIv1.0 annot-version=v1.0 MSIVHTTLYPLLPARTSRSFPSVVQAVLSRPSENLGSKEKKISKSLVHVATTTADDFLSTGISSSPPQQQQQPTKKTEYHDNWLEAAAIDYLSRHVQEAT GARNEKNGYESLVQATTDVTRKFDVSQQRQLVLQALAAAIPSPILNLVRTLLPNSKFKREYFAAFTTVFFPWLVGPCEVRESEFNGRKEKNVVHIKKCRF LEQSNCVGMCSNLCKVPSQTFIQASLGLPVNMVPNFDDMSCEMIFGEDPPPLNEDPAFKQPCSKLCMFPSHHFTRAKEKRCSVSALVFCLTY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03055			unknown protein		Lus10018752 [exp]	0	1
					Lus10034460 [exp]	5.2	0.8553
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	8.7	0.8570
					Lus10022087 [exp]	10.1	0.8800
AT1G30810			Transcription factor jumonji (...		Lus10008063 [exp]	12.7	0.8064
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	42.3	0.8369
AT4G04955		ATALN	allantoinase (.1)		Lus10018186 [exp]	45.1	0.8315
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	67.3	0.8225
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	68.5	0.7996
AT2G33580			Protein kinase superfamily pro...		Lus10019662 [exp]	99.9	0.8130
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	160.7	0.7945

Compare expression of checked genes

Lus10018752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.