Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38840 988 / 0 Guanylate-binding family protein (.1) AT5G46070 134 / 2e-32 Guanylate-binding family protein (.1) AT1G03830 70 / 4e-12 guanylate-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024841 [exp] 1164 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10014720 [exp] 1082 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003084 [exp] 760 / 0 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 315 / 2e-104 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1) Lus10015390 [exp] 151 / 6e-38 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 146 / 3e-36 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 142 / 5e-35 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10015327 [exp] 140 / 2e-34 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 83 / 3e-16 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046000 [exp] 1047 / 0 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 1006 / 0 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 144 / 1e-35 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.004G049400 [exp] 138 / 1e-33 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 134 / 2e-32 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02841 [flax] [poplar] GBP_C Guanylate-binding protein, C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02263 [flax] [poplar] GBP Guanylate-binding protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018755 pacid=23176235 polypeptide=Lus10018755 locus=Lus10018755.g ID=Lus10018755.BGIv1.0 annot-version=v1.0 ATGCACCGCCTCCTCCGCCCTCCGCCGCTGCATTCCTACGTCAAAACGATGACCATGACGACTACGACGGTGACTTCTCGCCGGAGTTTGATTCCTGCGC TTGCTCTCCTTCTCCTCTGCCTCTTTCCTTCTCTGTCCCGCTCGATTGACGACTTCCACCAAGCGTTTCCTATTGTTGAACCAGATCCAGGACATACAAA ACTTCGTCTTTCAAGTGAAGGCTTGGAAGCTATAAGACGAATAAAAAACCCAATTGCTGCTGTTGCTGTGATTGGTCCGTATCGTTCTGGAAAATCATTT TTGCTTAATCAACTTCTTTCCCTTTCTTGTGACGAAGGTTTTGGTGTTGGACATATGCGTGATACCAAGACAAAAGGAATTTGGGTATGGGGAACCCCCA TAGAATTAGACATCAATGGAGTAAAAACATCTGTGTTTTACCTAGATACTGAAGGATTTGAAAGCATTGGGAAGTCAAATGTCTATGATGATAGGATATT TGCTCTTGCAACCGTTTTGAGTTCCGTACTTGTTTATAATCTTCCCGAAACGATACGTGAGGCTGACATATCTCGCCTTTCGTTTGCTGTTGAACTTGCT GAAGAATTCTATGGAAGAGTGAAGGGTGAAGACGTTGCATTCGAACCTGCAAAACTTCTATGGCTTATTCAACGAGATTTTCTACAGGGAAAATCAGTGC AGGAGATGGTGAATGAAGCCCTTCGACGTGTCCCTAATCAAGACGGAGACAGAAATATAGATCAGGTTAATCAGATCCGAGAATCATTGGCTATAATGGG TGACAACAGCACAGCTTTTAGCTTGCCTCAACCGCATCTCCAGCGAACAAAGCTTTGTGAATTGAAGGACAGCGAGCTTGAGCAATCGTATGTCTCAAGA AGGGAGAAATTGAAAGAGATTGTTTCCAGTATCATTCGTCCAAAGATTGTGCAGGGTAAATCCTTGAACGGGGAAGAGTTTGTAGCATTCCTTGAGCAGA TTCTGGAAGCCTTAAACAAAGGAGAAATACCATCAACAGGATCTCTTGTAGAGGTTTTCAACAAGGCTATCCTTGAGAGATGTTTGAAAATATACAGTGA AGCGATGGCTAAATTGAATTTGCCTCTGACAGAGGAAACCGTGCAAGATGCCCATGGAAGGTCAAGGGAACAATCAATGAAAGTTTTCGATGAACAACAT TTTGGCCATCATCATGCCAAGACGTCCGTTATGCAACTCGATGAAGAAATAGATAAGGTTTACAAGCACATCATGATCACAAACGAATACCAATCTGCAA AACTCTGTGAGTCACTATACTCGAGTTGCGAGGACAAAATGGACCAGCTACAAGTTCTGAAACTTCCTTCCATGGCGAAATTCAATGCCGGGTTCTTACA GTGCAACCGGAGTTTTGAGCTGGAGTGTGTCGGACCTTCAAAAGCAGCGTACGAGAATCGTATGGTGAAGATGATGGGGAAATCGAAATCCCAATTCATA AAGGAATACAACCACAGGCTCTTCAACTGGCTGGTAACCTTCTCCCTTGTGATGGTAGTAGTAGGCCGTTTCATCATCAAGTTCATTCTGCTCGAAATGG GCGCTTGGATACTGTTTATCTTCCTCGAGACGTACACTCGGATGTTCTGGTCAGCCGAGTCGCTTTACTACAACCCGGTTTGGCATTTCATCGTCGCTAC CTGGGAGACCGTCGTGTACAGCCCCGTCCTTGATTTAGACAGGTGGGCGATACCGATGGTTTTCATCGTTGCGATGCTGCTGCTCTATTGGCGGTGTTAC GGCAGGAGGAAACACGGGTCGAGATGGCTACTGCCTGTGTACAAAAGCACGGCGAAGAACGGTCCAAACAGACCGAGATCAGAGTGA
AA sequence Show only first row Show all	>Lus10018755 pacid=23176235 polypeptide=Lus10018755 locus=Lus10018755.g ID=Lus10018755.BGIv1.0 annot-version=v1.0 MHRLLRPPPLHSYVKTMTMTTTTVTSRRSLIPALALLLLCLFPSLSRSIDDFHQAFPIVEPDPGHTKLRLSSEGLEAIRRIKNPIAAVAVIGPYRSGKSF LLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGTPIELDINGVKTSVFYLDTEGFESIGKSNVYDDRIFALATVLSSVLVYNLPETIREADISRLSFAVELA EEFYGRVKGEDVAFEPAKLLWLIQRDFLQGKSVQEMVNEALRRVPNQDGDRNIDQVNQIRESLAIMGDNSTAFSLPQPHLQRTKLCELKDSELEQSYVSR REKLKEIVSSIIRPKIVQGKSLNGEEFVAFLEQILEALNKGEIPSTGSLVEVFNKAILERCLKIYSEAMAKLNLPLTEETVQDAHGRSREQSMKVFDEQH FGHHHAKTSVMQLDEEIDKVYKHIMITNEYQSAKLCESLYSSCEDKMDQLQVLKLPSMAKFNAGFLQCNRSFELECVGPSKAAYENRMVKMMGKSKSQFI KEYNHRLFNWLVTFSLVMVVVGRFIIKFILLEMGAWILFIFLETYTRMFWSAESLYYNPVWHFIVATWETVVYSPVLDLDRWAIPMVFIVAMLLLYWRCY GRRKHGSRWLLPVYKSTAKNGPNRPRSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38840			Guanylate-binding family prote...		Lus10018755 [exp]	0	1
AT2G42520			P-loop containing nucleoside t...		Lus10015976 [exp]	1.0	0.9224
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10010274 [exp]	2.4	0.9176
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	14.7	0.8871
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	14.8	0.9187
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	21.3	0.9154
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	22.1	0.9171
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	27.9	0.8826
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	32.6	0.8531
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	34.6	0.8697
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	36.4	0.8585

Compare expression of checked genes

Lus10018755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.