Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10340 297 / 7e-93 Ankyrin repeat family protein (.1.2) AT2G24600 263 / 9e-80 Ankyrin repeat family protein (.1.2.3.4) AT1G34050 171 / 8e-46 Ankyrin repeat family protein (.1) AT5G54710 163 / 5e-43 Ankyrin repeat family protein (.1) AT5G50140 159 / 7e-42 Ankyrin repeat family protein (.1) AT5G54700 135 / 6e-34 Ankyrin repeat family protein (.1) AT3G09550 125 / 3e-30 Ankyrin repeat family protein (.1) AT2G31820 122 / 5e-29 Ankyrin repeat family protein (.1) AT2G01680 107 / 2e-24 Ankyrin repeat family protein (.1) AT5G02620 100 / 3e-22 ATANK1, ANK1 ankyrin-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024844 [exp] 991 / 0 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10024845 [exp] 384 / 5e-131 AT2G24600 193 / 5e-58 Ankyrin repeat family protein (.1.2.3.4) Lus10037894 [exp] 254 / 7e-76 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10038608 [exp] 167 / 2e-46 AT1G10340 168 / 2e-47 Ankyrin repeat family protein (.1.2) Lus10038609 [exp] 134 / 6e-35 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10003308 [exp] 131 / 4e-32 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003986 [exp] 126 / 3e-30 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 122 / 4e-29 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 118 / 9e-28 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187600 [exp] 503 / 8e-172 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 317 / 5e-100 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.008G048400 [exp] 125 / 3e-30 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 125 / 4e-30 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 122 / 3e-29 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 100 / 4e-22 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 99 / 7e-22 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 98 / 3e-21 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 93 / 5e-20 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 92 / 2e-19 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018757 pacid=23176296 polypeptide=Lus10018757 locus=Lus10018757.g ID=Lus10018757.BGIv1.0 annot-version=v1.0 ATGCATTCAAACCTGTTTGAGGCCATTCTAAGGAATGACATTGGACTGCTCAGAAGCTTGATTCAGGAGAATGAGGCCATTCTGGAGCAAACAGCAGCTT CCAGATTGGAAACAGCCCTTCACCTGGCTGTAAAATATGGTCAGAAAGATCTGGTGGAGGAGATCCTGAAGGTCCGACCGCAGATGGTTCAGGCTGAGAA CAAGAACCTCGAAACTCCTCTCCATGAGGCCTGTAGGCAAGGGAATCCCATCATTGTCCTGTTGCTGCTTGAGGCTCATCCTTGGGGAGCTTGCAAGCTG AACTACCAGAATCAAACGACACTTTTCATCTCCTCCAGGAACGGCCACTTGGATGTAGTCCAGATCCTGTTGAGGCAGCCATGGCTGCTGGGGATTGACG ATGATGTTCCTGTGTCTTCTCTTTTATGTTGCAGTTTCAAAAGGCACGAGGTTGATATGGCCCTCCACCTCAACAACTCTGGTCACACTCCACTGCACCT GGCAGCCATCAATGGTCATGGACAGACCCTCAAAGCGTTCATGGAAATAGCTCCTTCGTCATTCCACCGCCTTACTACTGACAAAGAGACGTTGTTCCAT ATGGCAGTGAGATTCAATAGGCTCACAGCCTTTCAATTTCTGGCAAGTCTTTTCAGTGACACAAACCTGTTTCACTGCCCAGACGAATTTGGAAACACAG TTTTACATTTTGCAGTCTCCAGCGGACACTACTTGCTAGCAGGGTACATCATCAATGAGACAAGAGTGAAGATCAACTCCAAGAACGCCAGAGGACTGAC AGCACTTGACATGATAAAACATACTGAAAATACTATAGAGATGAGTAGCCTTAGAGAAACAATGGTGAAAGCAGGTGGTAAAACATACAGTGAAGAAGCT TCAGCAACCTCACCAGAGAGTCCTAGTCCTAGAGATGCACTCAAACGAGAATATGATAGCCTGCGGCTCGCTCCATCACCAGCAGACCATAATTCAGTAG AATACCTTCACGAGATATCAGTGTCTTCGGTAGATGGAACCTCTGACTCACAAATTGATGAAGACTCCTCAAAACAGAAGAAACCAAAGGCAGCAGCAAG AAGACCATCTTTGAAATTAGTGAAGCACAAGAGTCGGCTACGAAAGGAAGAGCTGGTCAAGATGTACAGAATGCAACACAAGAGGAACCACAAGGTGTAC ATAGAGGCTCTACAAAATGCCAGGAACACAATCATACTTGTAGCCATACTGATTGCAACAGTGACTTCCGCAGCTGGTATCAACCCTCCCGGTGGGGTGC ATCAAGATGCAGGTCCATTGGGAGGGCAATCGACAGTGGGGAGAACAACAGCATTCAGAGTATTTATGATATGCAACAACATTGCATTGTTCACATCTCT GGCCATAGTGGTAGTTCTGCTTAGCATAATTCCATTCTGGAGGAAGCCGTTGATGAGGCTCCTGACAGTTGCTCACCAAGTGCTGTGGGTGGCAGTGGCA TTCATGGCTGTTAGCTACATAGCAGGAACTTGCGTGATCATGCCACGCGGTGGCGATGGAAAATGGGACTTTGGAGCCGCTGTGTCGATTGGGGCTGGTG GGTTGGCGACTGTCTTCCTTTGGCTTGGAGTGATTTTGGTGAAGCATTGGCTGCGGAAAACTAAGTGGAGAGAAGAAAGGAATGGGAGAGAAGGAGAAGG AGAAGGAGAAAGATATGATGAGCTTAATAAGGAGATTGTACAACCGACATCATGGCAGTGGCGTTATTCACAATCTTCCAACTCTGATGTGGATAGCGCC GTACTTTTGGGTTTCCACACCTATTGA
AA sequence Show only first row Show all	>Lus10018757 pacid=23176296 polypeptide=Lus10018757 locus=Lus10018757.g ID=Lus10018757.BGIv1.0 annot-version=v1.0 MHSNLFEAILRNDIGLLRSLIQENEAILEQTAASRLETALHLAVKYGQKDLVEEILKVRPQMVQAENKNLETPLHEACRQGNPIIVLLLLEAHPWGACKL NYQNQTTLFISSRNGHLDVVQILLRQPWLLGIDDDVPVSSLLCCSFKRHEVDMALHLNNSGHTPLHLAAINGHGQTLKAFMEIAPSSFHRLTTDKETLFH MAVRFNRLTAFQFLASLFSDTNLFHCPDEFGNTVLHFAVSSGHYLLAGYIINETRVKINSKNARGLTALDMIKHTENTIEMSSLRETMVKAGGKTYSEEA SATSPESPSPRDALKREYDSLRLAPSPADHNSVEYLHEISVSSVDGTSDSQIDEDSSKQKKPKAAARRPSLKLVKHKSRLRKEELVKMYRMQHKRNHKVY IEALQNARNTIILVAILIATVTSAAGINPPGGVHQDAGPLGGQSTVGRTTAFRVFMICNNIALFTSLAIVVVLLSIIPFWRKPLMRLLTVAHQVLWVAVA FMAVSYIAGTCVIMPRGGDGKWDFGAAVSIGAGGLATVFLWLGVILVKHWLRKTKWREERNGREGEGEGERYDELNKEIVQPTSWQWRYSQSSNSDVDSA VLLGFHTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	0	1
AT3G13950			unknown protein		Lus10029088 [exp]	1.4	0.8884
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10037677 [exp]	2.6	0.8494
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	2.8	0.8654
AT5G51160			Ankyrin repeat family protein ...		Lus10029089 [exp]	3.2	0.8860
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10030054 [exp]	3.3	0.8153
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	3.5	0.8716
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	5.5	0.8410
AT3G02100			UDP-Glycosyltransferase superf...		Lus10021163 [exp]	5.8	0.8048
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	9.7	0.8648
AT1G11070			unknown protein		Lus10038307 [exp]	10.2	0.8460

Compare expression of checked genes

Lus10018757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.