Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54620 164 / 4e-46 bZIP BZO2H4, ATBZIP25 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) AT4G02640 153 / 1e-41 bZIP BZO2H1, AT4G02640, ATBZIP10 Arabidopsis thaliana basic leucine zipper 10, bZIP transcription factor family protein (.1.2) AT5G28770 135 / 7e-36 bZIP BZO2H3, ATBZIP63 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) AT5G24800 72 / 6e-14 bZIP BZO2H2, ATBZIP9 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024847 [exp] 647 / 0 AT3G54620 171 / 2e-48 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024848 [exp] 603 / 0 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10015913 [exp] 160 / 4e-44 AT5G28770 244 / 7e-78 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10006590 [exp] 157 / 5e-43 AT5G28770 260 / 2e-84 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10026973 [exp] 64 / 6e-11 AT5G24800 191 / 6e-59 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Lus10020170 [exp] 56 / 2e-08 AT5G24800 148 / 3e-43 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045800 [exp] 246 / 1e-75 AT3G54620 123 / 1e-30 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.005G217500 [exp] 238 / 1e-73 AT3G54620 160 / 2e-44 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.013G040700 [exp] 170 / 5e-48 AT5G28770 234 / 9e-74 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.005G053200 [exp] 155 / 3e-42 AT5G28770 223 / 1e-69 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.006G277800 [exp] 64 / 5e-11 AT5G24800 222 / 2e-71 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12498 [flax] [poplar] bZIP_C Basic leucine-zipper C terminal CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10018759 pacid=23176293 polypeptide=Lus10018759 locus=Lus10018759.g ID=Lus10018759.BGIv1.0 annot-version=v1.0 ATGCACAACGTCTTCTCCGCCGACGACTTCACCGACCCCTTCTGGCAGGCGGCCGCCCCTTCGGATGCGGCGATCAACAGGAACGCGTCGGAGTGGGACC TGGAGAGGTTCCTCCGTGAATTTCCTTCGTCCGGTTCCAACTCCGCTAGCGACAGCACCGTCACTGTGCCTTCGCAATCTCCGCCACCGACGAAGCCGGA GAATTGCGACGGCGATGTGATTGAGATCAGGCAGCCGCCTCCGCAGCTCCGGAGTCATGTTCATTCTCAGCATCATTCTCAGCCTCATCACGTCCCTCAG CCGCTGGATCGTGCTCCGATGGGTGCTACGATCGACACGGAAGAGTACAGGGCTTTTCTCAAGTCTCAGCTCGATCTGGCGTGCGCTGCCGTGGCTAGGA ATCAGACAGCGGTTGTGAAGCCTCCTGATTTTTCTCCTTTGCCTGAGAATCAAAGTCCAGCTCCAGCTGCTAATAGTTTCCACTTGGGATCGCAACTACC ATGTGCAGGTGCAAGTGCAGGTATTGGTCTTGGAACCACAATTGCACAGAGACAGGACCATGGATCACCTACAATTCAGCCGTTACCGGTGCCACAAAAG AAACAAGAGGTACAAACGAGGCAAACAACTGGTGGCTCATCAGGAGAAGATTCAGAAGATGATGATCTTGAAGGAGATACTGGCACCAATGGAGCTCCTG CTGATGTAAAGCGCTCAAGGAGGATGCTGTCAAATCGAGAATCAGCTAGACGCTCAAGGAGAAGAAAACAAGATCAACTCAATGAACTTGAATCACAGGC TGGTCAGCTTAGAGATGAACGCACAACTCTCCTGTCCCGGCTCACTGATGTGAATCACAAGTGTGATGAAGCTTCTGTTGACAACCGAGTCTTGAAGGCT AATATCGAGACTTTAAGGGCAAAGGTGAAGATGGCTGAAGAACAGGTCAAACGAGTGACCGGTTTGAACCCATTGCTTCTAGCAAGATCCAACGTCCCCA GTATGGGCATGCATCATCAGTATACCGGAGGCACCCCCAACCACCAGTCCTTCCACCACCCGCCTCCAAACATGGCTCCTTCCGGTCCACCTCCACATAT GCAGCAACCAATGCACTACCCGAGCAACAATGTCGCTCCAGTCACCGCTAATTCCCACGGTGTCAATGGAATGAACCACAACATCGGTGGCATGAACTCT ATGCCGTTCCGAGCCAATGAGCATAATAGAGTTGCAGACGTCGTGGCTCCTCCGATGCAGAAGCCGGTGGGTCCTGGTGCAAATCCACGGCCTGTGGACG CGACTGGACTAGGGATCCATGGAGTGGCCAAACTTGACAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10018759 pacid=23176293 polypeptide=Lus10018759 locus=Lus10018759.g ID=Lus10018759.BGIv1.0 annot-version=v1.0 MHNVFSADDFTDPFWQAAAPSDAAINRNASEWDLERFLREFPSSGSNSASDSTVTVPSQSPPPTKPENCDGDVIEIRQPPPQLRSHVHSQHHSQPHHVPQ PLDRAPMGATIDTEEYRAFLKSQLDLACAAVARNQTAVVKPPDFSPLPENQSPAPAANSFHLGSQLPCAGASAGIGLGTTIAQRQDHGSPTIQPLPVPQK KQEVQTRQTTGGSSGEDSEDDDLEGDTGTNGAPADVKRSRRMLSNRESARRSRRRKQDQLNELESQAGQLRDERTTLLSRLTDVNHKCDEASVDNRVLKA NIETLRAKVKMAEEQVKRVTGLNPLLLARSNVPSMGMHHQYTGGTPNHQSFHHPPPNMAPSGPPPHMQQPMHYPSNNVAPVTANSHGVNGMNHNIGGMNS MPFRANEHNRVADVVAPPMQKPVGPGANPRPVDATGLGIHGVAKLDKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	0	1
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10040301 [exp]	1.7	0.7087
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	8.1	0.7046
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034308 [exp]	9.9	0.6331
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	11.0	0.6372
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	11.8	0.6496
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	12.7	0.6937
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	16.1	0.6151
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	17.2	0.6478
AT4G32250			Protein kinase superfamily pro...		Lus10009358 [exp]	17.3	0.6095
AT1G03910			unknown protein		Lus10027731 [exp]	19.0	0.6468

Compare expression of checked genes

Lus10018759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.