Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02590 313 / 2e-106 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 289 / 3e-97 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G58010 179 / 2e-54 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 179 / 2e-54 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G24260 180 / 3e-54 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G50915 93 / 1e-21 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23690 94 / 2e-21 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 92 / 1e-20 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10120 91 / 1e-20 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G07340 91 / 2e-20 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024850 [exp] 496 / 3e-179 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 408 / 3e-144 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 283 / 2e-96 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 231 / 4e-73 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 226 / 4e-72 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 170 / 4e-50 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 137 / 5e-38 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10003172 [exp] 92 / 3e-21 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023562 [exp] 92 / 4e-21 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217800 [exp] 356 / 1e-123 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 342 / 2e-118 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G053500 [exp] 243 / 1e-78 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 230 / 1e-73 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.018G109500 [exp] 179 / 2e-52 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 176 / 1e-51 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 158 / 8e-45 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.002G235400 [exp] 95 / 1e-21 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 93 / 3e-21 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G114700 [exp] 93 / 4e-21 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018761 pacid=23176246 polypeptide=Lus10018761 locus=Lus10018761.g ID=Lus10018761.BGIv1.0 annot-version=v1.0 ATGGCCGGTAATCCTCCCGGCACACCGGCCGACGATTTCCTCCACGAAATCCTCGGCCTCCAAAGCTTCGTCTCCGCCGATGATGCTCTCGCCGTCGCCT CAGCAGCTCAAGCTCCGATGTTTCTTCAGCTCAGCTCCGGAGACGCCTCCTCCGCCGGGATGACCGGTGATCCCCCGGGGTTCCATGGATTCCCCCTGGG GCTCAGCTTGGACCAAGGCAAGGGAGGGTTTCTCAATCCCGATGATGCCTCGGGAAGCGGGAAGCGGTTCCGAGACGACGTCGTCTTTGATGGTAGAGTC CCCGCGGTCCAAAATGTTTTCCATGGTCAACCAATGCCGACTTCTGTACCAGCAGCACCGCATGCTCCAACAATGCGTCCAAGGGTAAGAGCGAGAAGAG GACAAGCCACGGATCCACACAGTATCGCCGAACGTTTGCGCCGAGAAAAAATAGCAGAGAGAATCAGGGCATTGCAGGAGTTGGTGCCTAGTGTCAACAA GACCGATAGAGCTGCCATGCTCGACGAAATTGTGGATTATGTCAAGTTTCTTAGACTTCAGGTAAAGGTTCTCAGTATGAGTAGACTAGGAGGAGCCGGA CTTGTAACGGAGATCCCACTATCATCAGTGGAGGTAAGTAATCATGAAAACTGTGGAACTTTAATGGAAGTTAAGCTGCTCTCATCACTTGTCGGTTGTC ATCGTCAGGATGAAAGTGTGAGAAGTCAATCAGCGTGGGAGAAGTGGACAAGCGACGGGACAGAAAGGCAAGTAGCCAAACTGATGGACGAAAACGTGGG TGCTGCGATGCAGCTTCTTCAATCAAAGGCTCTCTGCATAATGCCAATCTCCCTTGCTTCGGTCATCTACCATACGCAACCACCACTGCTGGATCCCCAA GCCGTCGTCAAACCAGGATCGAATCCACCCTCATAG
AA sequence Show only first row Show all	>Lus10018761 pacid=23176246 polypeptide=Lus10018761 locus=Lus10018761.g ID=Lus10018761.BGIv1.0 annot-version=v1.0 MAGNPPGTPADDFLHEILGLQSFVSADDALAVASAAQAPMFLQLSSGDASSAGMTGDPPGFHGFPLGLSLDQGKGGFLNPDDASGSGKRFRDDVVFDGRV PAVQNVFHGQPMPTSVPAAPHAPTMRPRVRARRGQATDPHSIAERLRREKIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAG LVTEIPLSSVEVSNHENCGTLMEVKLLSSLVGCHRQDESVRSQSAWEKWTSDGTERQVAKLMDENVGAAMQLLQSKALCIMPISLASVIYHTQPPLLDPQ AVVKPGSNPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10018761 [exp]	0	1
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10002041 [exp]	1.4	0.8184
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	7.3	0.8027
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	7.4	0.8080
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10041769 [exp]	13.0	0.7813
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	13.6	0.8505
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	15.5	0.7562
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	16.9	0.7891
AT1G16520			unknown protein		Lus10031771 [exp]	17.7	0.7651
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	19.1	0.7988
AT1G15190			Fasciclin-like arabinogalactan...		Lus10015081 [exp]	23.0	0.7925

Compare expression of checked genes

Lus10018761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.