Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47720 107 / 2e-27 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT4G20010 96 / 3e-22 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT5G44785 77 / 1e-15 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G31010 67 / 1e-12 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024852 [exp] 494 / 1e-178 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10014728 [exp] 385 / 2e-135 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 201 / 9e-64 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2) Lus10021767 [exp] 79 / 2e-16 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10032760 [exp] 0 / 1 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218100 [exp] 325 / 7e-112 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.002G045100 [exp] 325 / 8e-112 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.014G035600 [exp] 113 / 9e-29 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 90 / 2e-20 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) Potri.002G129166 [exp] 50 / 4e-07 AT1G47720 84 / 2e-19 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10018763 pacid=23176271 polypeptide=Lus10018763 locus=Lus10018763.g ID=Lus10018763.BGIv1.0 annot-version=v1.0 ATGGCGTTGCAACAACTGTCTTCGCTAGCGTTCTCCAGCAAGGTTCATTTATGCTGTCCGAGTAAACTTTTGGCGAGCGACAATTTGCCTGTTTCGTCGT CGATAACTTCTCTCCAGCCGGGATTCAAACGGTCGGGCTTGAACTGTAGGCTGAAGTGTTCGGCTGATTACAGAGACTACGAACAGCACAACCAGGCAAT GGTTGGCCACGAGAGGCCAGCCGAGATTCCATGGAAGAAGGAGCTCTGCAACACGGTGCAGCTCATCGGCATAGTGGACGGTCCCGTCGAAATGAAGGAC CTCCCGTCCGGGAAGGTCGTCGCGTGGACGAGGCTAGGGTTCAAGAAGTCTGCCGCCGATACCTGCTGGATCAACCTGACATTCTGGGATGAATTGGCGC GAACTGCATCTCAACATTTGCAGCAAGGGAACCAGATTTATGTGTCTGGTCGATTGATTTCAGATGCAGTTGAGAATGAGGAGGGAAAAGTCGTGACTTA CTACAAGTTAGTGGTGCAGCAGTTCAATTTCATCGAAAGAAATGGGTCTTCTTTCTCATCATATGGGGAAGGATCATCTAACATGAACGGTTCTGGAAGC AGAAAGTTCAACAACAGCAACAACACTTCAAATATGGGTTCCATAGAAGAGCAATGGCAGGCATTTTTCGCTAGCCCTTCAGAGTGGTGGGACAACAGGA AGAACAAGAGGAACTCCAAGTATCCAGATTTCAAGCACAAAGATACAGGGGAAGCGTTGTGGGTTGAAGGCAGGTATAACCCATCCTGGGTGAAGTCTCA ACTGGCGGTATTGGATGAGAGATTGGGGACGATGGTTGGTGACGAGGATAACAGCAGAAGGGATATAAGCTCATTGGGGACCAACGAATTCTTGTCTTTC TAG
AA sequence Show only first row Show all	>Lus10018763 pacid=23176271 polypeptide=Lus10018763 locus=Lus10018763.g ID=Lus10018763.BGIv1.0 annot-version=v1.0 MALQQLSSLAFSSKVHLCCPSKLLASDNLPVSSSITSLQPGFKRSGLNCRLKCSADYRDYEQHNQAMVGHERPAEIPWKKELCNTVQLIGIVDGPVEMKD LPSGKVVAWTRLGFKKSAADTCWINLTFWDELARTASQHLQQGNQIYVSGRLISDAVENEEGKVVTYYKLVVQQFNFIERNGSSFSSYGEGSSNMNGSGS RKFNNSNNTSNMGSIEEQWQAFFASPSEWWDNRKNKRNSKYPDFKHKDTGEALWVEGRYNPSWVKSQLAVLDERLGTMVGDEDNSRRDISSLGTNEFLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10018763 [exp]	0	1
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10004829 [exp]	6.2	0.8915
AT3G62000			S-adenosyl-L-methionine-depend...		Lus10036339 [exp]	8.1	0.8833
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	10.9	0.8890
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10030017 [exp]	17.8	0.8824
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	18.0	0.8740
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	18.5	0.8621
					Lus10035524 [exp]	18.7	0.8246
AT3G57930			unknown protein		Lus10031806 [exp]	22.4	0.8595
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10034272 [exp]	24.8	0.8385
AT5G53500			Transducin/WD40 repeat-like su...		Lus10012846 [exp]	30.8	0.8067

Compare expression of checked genes

Lus10018763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.