Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54650 588 / 0 FBL17 RNI-like superfamily protein (.1) AT1G03030 382 / 9e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G27440 53 / 7e-07 UKL5 uridine kinase-like 5 (.1) AT1G32060 44 / 0.0003 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024856 [exp] 843 / 0 AT3G54650 634 / 0.0 RNI-like superfamily protein (.1) Lus10024855 [exp] 822 / 0 AT3G54650 548 / 0.0 RNI-like superfamily protein (.1) Lus10018769 [exp] 673 / 0 AT3G54650 520 / 0.0 RNI-like superfamily protein (.1) Lus10018768 [exp] 260 / 4e-79 AT3G54650 216 / 1e-64 RNI-like superfamily protein (.1) Lus10041569 [exp] 52 / 1e-06 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044800 [exp] 688 / 0 AT3G54650 561 / 0.0 RNI-like superfamily protein (.1) Potri.005G218400 [exp] 669 / 0 AT3G54650 546 / 0.0 RNI-like superfamily protein (.1) Potri.005G218700 [exp] 431 / 1e-145 AT1G03030 395 / 5e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018767 pacid=23176200 polypeptide=Lus10018767 locus=Lus10018767.g ID=Lus10018767.BGIv1.0 annot-version=v1.0 ATGCATCCATACCAGCACCCTCACCTCCCCCAACCCCATATTGCCCCGGCGACCCCAGGTGGATCCACAGCGTCCTACTCCTCATTTGACTTCAGCAAGA AGAAACAGCATCGCGGCAGCTACAACTGTGGTAGATGTGGCCTCCCGAAGAAAGGCCACGTCTGCCACCTACCTCCGCCGCCGTCCACTTCCGACGACGT AGATGCCTCTCCCCTCGCCGTGGTCACGCCTTCCGATACCATATCGGCATCCGTTTCCTCCTCATCCCGTCCTGCTCCCCCGCCGGCATCGCTGTCTTCT TCGACTCGGTGTGCGAATCTCCGGAGAGCGCTATCGTTTGACGATATGGATACGAGGTGCGACTATTCGGAGGTAGTTGTGTTAGGCCCTGAGCTGGATC TGGGAGGATCGGGCTCCGGGGGATTGCCATCGAGCTTGATGTGGGAGGTTTTGAGGAGACTGCCGCCGGCTGGATTGATGACTGCGGCGGCGGTGTGCAA GGGGTGGCGGGACACTGCTAAGGGGTTGTGGAGAGCTGCGGAGGAGCTCAGGGTTACAGTTCCTCCTAGATCTCAGCTAGGGTTTGTTGGATCTGTGTTG CAGAAGTGCCCTGGACTTGTTAGACTCAGTCTTAGTATGAAAAGTAATGTCGAAGCAACGATGCTGGCTTGCATAGCGTTTTCTTGTCCCAATCTGGAGT CCATGGAGATATGCATGATGGATACAGCAGTCAATCGCATCACAGGCGATGAGTTGGGGCGCTTTGTTGCTGACAAGCGTTGCCTCACAACCCTCAAGAT GGAAGGTTGCTCTAATCTAGGTGGTTTTGTTCTCAGTTCGTCGAGTCTATCTACACTTTGGCTTTCTGATCTTCATTCTCTTTCCAAAATGGTATTTAAT TGCCCCAATATGAGAGAGATTTCTCTGGGGTTTTCTCGCCAGGAAAATGACACAACTGATCTTGTTGGAATGGTTGACAAGCTGGGTATGTTTTGTACTA GGTTGCAGAACATTCACATAGCATCTGTTAGGCTTTCCAATGCCGCTGTGCTTGCACTTACAGCTGCCAAGTTAAGGTGTCTTCGCATGCTTTCTCTTGT GCTTGGAGCCGATATAACTGATGCATCTGTTGCTGCCATTTCGTCATGTTATTCAAAACTGGAACTTCTCGACCTGAGTGGGTCTAGCATTACTGATAGT GGCATTGGCATGATTTGCAATGTATTTCCTGCAACACTGTCAAGACTGCTCTTAGCTCTTTGTCCTAACATCACTTCCAGTGGAATTCAGTTTGCTACAG CGCAGTTACCTCATCTTGAACTCATAGATTGTGGCTTGACAATTTGTGACCCAAGTTCTGATAGTCTAACCAGTGATGGAAACAGCGACTTTGAGTTGCA TGAAAACAAAGCGCACCTCATATATCAGAAGCTGATTGTCAAGCATGCCCGGCTGAAAAAGCTCAGTCTATGGGGCTGTTCTGGTTTGGATGCACTATAC CTTAACTGTCCAAAACTCAGTGATCTGAATCTCAACACCTGTAGGAACTTACATCCAGAGAGATTGCTCCTTGAATGCCCAAATCTGGAAAGTGTTCATG CATCTGGTTGTCACAAATTGTTGGTTGCCAACATCCATAAGCAGGTTGACAGTGATGATAGCTGCAGTGCTCCATCTTGTAAAGCTAATTATCCCACCAA AAGGACACTCGAAGGCTCAAAGAGGGTGTGGGTGCCCTACGATCTTGGAGAGCAGCAACAGGTGTTTTGCAGCCAAATGAGGGACATTCCAGTTGTAGAG GCTAGCTCAATGGATGAGATATATGATGCATTGGCTGAAAGGATTGTTCTCAATGCAGCGGTAGCTGCAAATCTTGATACCAAGCATATTGTGGGCTTGG CTGGTCCTCCTGGAGCTGGAAAAAGCACCGTGGCTTCTGAAGTAGTGAAACGTGTGAATAAGTTGTGGCCATTAAAGGCTGGCTCATTTGATTCACAAGT TAATCCACCAGATGTTGCTACAGTTCTTCCCATGGATGGCTTTCATCTTTACCGCTCACAGCTTGATGCAATGGAGGATCCCAAGGAAGCTCATGCTAGG AGGGGAGCTCCATGGACATTTGCTCCTGATCTACTGCTCAACTGTCTAAGGACGTTGAGGAATGAGGGATCGGTTTCCGTACCATCATTTGATCACGGTG TTGGAGATCCAGTTGAGGATGACATATTTATCAGCGTTCAGCATAAGGTGGTGATAGTTGAGGGAAACTATCTTTTCTTAGAAGAAGGGCTTTGGAAAGA CGTGCAATCTATCTTCGACGAGAAATGGTTCGTCGACATTGATGTAGACACTTCCATGAATCGGGTCTTAAAACGACATATTTCAACGGGAAAGCCTCCG GATGTTGCCAAATGGAGGATAGAATACAACGACCAGCCGAATGCAGAGCTCATAATGAAGTCAAAGAAAAATGCAGACTTAGTAATCAGGTCTGTCGATT TCTTCTGA
AA sequence Show only first row Show all	>Lus10018767 pacid=23176200 polypeptide=Lus10018767 locus=Lus10018767.g ID=Lus10018767.BGIv1.0 annot-version=v1.0 MHPYQHPHLPQPHIAPATPGGSTASYSSFDFSKKKQHRGSYNCGRCGLPKKGHVCHLPPPPSTSDDVDASPLAVVTPSDTISASVSSSSRPAPPPASLSS STRCANLRRALSFDDMDTRCDYSEVVVLGPELDLGGSGSGGLPSSLMWEVLRRLPPAGLMTAAAVCKGWRDTAKGLWRAAEELRVTVPPRSQLGFVGSVL QKCPGLVRLSLSMKSNVEATMLACIAFSCPNLESMEICMMDTAVNRITGDELGRFVADKRCLTTLKMEGCSNLGGFVLSSSSLSTLWLSDLHSLSKMVFN CPNMREISLGFSRQENDTTDLVGMVDKLGMFCTRLQNIHIASVRLSNAAVLALTAAKLRCLRMLSLVLGADITDASVAAISSCYSKLELLDLSGSSITDS GIGMICNVFPATLSRLLLALCPNITSSGIQFATAQLPHLELIDCGLTICDPSSDSLTSDGNSDFELHENKAHLIYQKLIVKHARLKKLSLWGCSGLDALY LNCPKLSDLNLNTCRNLHPERLLLECPNLESVHASGCHKLLVANIHKQVDSDDSCSAPSCKANYPTKRTLEGSKRVWVPYDLGEQQQVFCSQMRDIPVVE ASSMDEIYDALAERIVLNAAVAANLDTKHIVGLAGPPGAGKSTVASEVVKRVNKLWPLKAGSFDSQVNPPDVATVLPMDGFHLYRSQLDAMEDPKEAHAR RGAPWTFAPDLLLNCLRTLRNEGSVSVPSFDHGVGDPVEDDIFISVQHKVVIVEGNYLFLEEGLWKDVQSIFDEKWFVDIDVDTSMNRVLKRHISTGKPP DVAKWRIEYNDQPNAELIMKSKKNADLVIRSVDFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018767 [exp]	0	1
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10016747 [exp]	6.2	0.7582
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	45.9	0.6710
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	46.5	0.7010
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	49.9	0.7053
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	133.0	0.6663
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	133.6	0.6440
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	178.8	0.6151
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	183.5	0.6335
					Lus10025138 [exp]	230.8	0.6017
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	231.1	0.6139

Compare expression of checked genes

Lus10018767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.