Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54650 217 / 8e-65 FBL17 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024856 [exp] 347 / 6e-111 AT3G54650 634 / 0.0 RNI-like superfamily protein (.1) Lus10024855 [exp] 271 / 4e-86 AT3G54650 548 / 0.0 RNI-like superfamily protein (.1) Lus10018767 [exp] 270 / 6e-83 AT3G54650 618 / 0.0 RNI-like superfamily protein (.1) Lus10018769 [exp] 251 / 5e-79 AT3G54650 520 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218400 [exp] 229 / 2e-69 AT3G54650 546 / 0.0 RNI-like superfamily protein (.1) Potri.002G044800 [exp] 226 / 1e-68 AT3G54650 561 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018768 pacid=23176264 polypeptide=Lus10018768 locus=Lus10018768.g ID=Lus10018768.BGIv1.0 annot-version=v1.0 ATGCATCACCACCCACACCCTCACCCTCGCTTACCCCAGCACCACATTTCCCCGGAGACCCCAGGTGGATCCACCCCGTCTTTCGTCTTCAGTAAGAAGT ATTACCGCAGCTACAACTGTGGTAGATGTGGCCACCCGAAGAAAGGCCACGTCATGCCATCTGGTACCATATCGGTCTCCGTCTCCTCCTCATCCCCTCC TGCTCCATCTGGTGGATCCACCGCGTCCTTCTCCTCCTTTGGCTGCAGCAAGAAGAGGCATCGGGGCAGCTATAACTGTGGTAGATGTGGCCTCCTGAAC TCATCGGTAGCATTTCTCACTTCTCACGATGATTTGATGATTTACGTCGTTTTGTTATTGACATTGACAAAAGTTCCCTCAACCCTTAAGATGGAAGGTT GCTCTAATCTAGGGGGTTTTGTTCTCTGTTCGGTGAAGCTATCTGCACTTTGGCTTTCTGATCTTCATTCTCTTTCCAAAATGGTATTTCATTGCCCCCT CATGAAAGAGCTTTCTCTTAGTTTTTCTCGCTACGAAAATGACACAACTGATCTTGTTGAAATGGTTGACAATTTGGGCCGGTATACTACTAGGTTGCAG GACATTCGCATTTCATCTGTTAGGCTTTCCAATGCCGTTGTGCGTGCACTTACAGCTGCGAAGTTGAGGCATCTTGGCTTTCTTTCTCTTGTGCATGGAG CCGATATCACTGATGCATCAGTCGCTGCCATTTCAAAACGTTATTCAAATCTATATCTTCTCGACCTCAGTGGGTCTAGCATTACTGGTAGTGGTATTCG AATGATCTGCAAAGTATTTCCCGACACACTGTCGAGATTGCACTTAGCTCTTTGTCCTTACATCACTTCCACCGTCGTCTCATTTTCAGGTGGAATCCAG TTTGCTACAGATGAGTTATCTTATCTTGACTACATGGATTGTGGCTTGAAAATTTGCGACGCAAGTTCTCGCAGTCTAAATTGTCTAACCGGTCATGGAA ACAGCGACTTTAGATTGCATACGGCATTTGGAAACAAATCGCTGCTCATATATCCGAAGCTGATTGTCAATACACCGCACCAGAGTGCCACTCATGTCTC GCGTGGTACCACTGCGAGCATACTAGGGAAACGCGACCCTCTCCGACGATTCAGCTGA
AA sequence Show only first row Show all	>Lus10018768 pacid=23176264 polypeptide=Lus10018768 locus=Lus10018768.g ID=Lus10018768.BGIv1.0 annot-version=v1.0 MHHHPHPHPRLPQHHISPETPGGSTPSFVFSKKYYRSYNCGRCGHPKKGHVMPSGTISVSVSSSSPPAPSGGSTASFSSFGCSKKRHRGSYNCGRCGLLN SSVAFLTSHDDLMIYVVLLLTLTKVPSTLKMEGCSNLGGFVLCSVKLSALWLSDLHSLSKMVFHCPLMKELSLSFSRYENDTTDLVEMVDNLGRYTTRLQ DIRISSVRLSNAVVRALTAAKLRHLGFLSLVHGADITDASVAAISKRYSNLYLLDLSGSSITGSGIRMICKVFPDTLSRLHLALCPYITSTVVSFSGGIQ FATDELSYLDYMDCGLKICDASSRSLNCLTGHGNSDFRLHTAFGNKSLLIYPKLIVNTPHQSATHVSRGTTASILGKRDPLRRFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018768 [exp]	0	1
AT2G14540		ATSRP2	serpin 2 (.1)		Lus10009905 [exp]	3.5	0.7567
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10031144 [exp]	6.9	0.7465
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	9.9	0.7377
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	54.1	0.6945
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10015608 [exp]	62.0	0.6757
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	71.3	0.6681
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021393 [exp]	75.2	0.6600
AT1G23850			unknown protein		Lus10014532 [exp]	81.3	0.6992
					Lus10021381 [exp]	84.6	0.6689
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	92.7	0.6589

Compare expression of checked genes

Lus10018768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.