Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54650 455 / 1e-155 FBL17 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024856 [exp] 739 / 0 AT3G54650 634 / 0.0 RNI-like superfamily protein (.1) Lus10018767 [exp] 640 / 0 AT3G54650 618 / 0.0 RNI-like superfamily protein (.1) Lus10024855 [exp] 530 / 0 AT3G54650 548 / 0.0 RNI-like superfamily protein (.1) Lus10018768 [exp] 211 / 2e-63 AT3G54650 216 / 1e-64 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044800 [exp] 582 / 0 AT3G54650 561 / 0.0 RNI-like superfamily protein (.1) Potri.005G218400 [exp] 550 / 0 AT3G54650 546 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018769 pacid=23176249 polypeptide=Lus10018769 locus=Lus10018769.g ID=Lus10018769.BGIv1.0 annot-version=v1.0 ATGGATGCGAGGTGCGACTCTCCCGAGGTAGAGGTGTTCGGTTCCGAGCTGGATCTGGAAGGATCGGGCTCTGGGGGATTGCCATCGAGCTTGATGTGGG AGGTTTTGAAGAGACTGCCGCCGGCTGGGTTGATGGCTGCGGCGACGGTGTGTAAGGGGTGGAGGGACACTGCTAAGGGGCTGTGGAGAGCTGCGGAGGA GCTCAGGCTTATAGTTCCTCCTAGATCTCAGCTAGGGCTTGTTGGATCTGTGTTGCAGAAGTGTCCTGGACTTGTTAGACTCAGCCTTAGGATGGAAAGT GACGTTGAAGCAACGATGTTGGCTTGCATAGCGTTTTCATGTCCGAATCTGGAGTCCATGGAGATACGCATGACGGATGCAGCAGTCAACCGCATCACAG GCAATGAGTTAGGTCGTTTTGTTGCTGACAAACGTTGCCTCACAACCCTTAAGATGGAAGGCTGCTCTAATCTCGGGGGTTTTGTTCTCTGTTCGTCGAG TCTTTCTACCCTTTGGCTTTCACATCTTCATTCTCTTTCTAAAATGGTATTTAATTGCCCCAATATGAGAGAGATTTCTCTGGGTTTTTCTCCCCAGGAA AATGATACAACTGATCTTGTGGGAATGGTTGACAATTTGGGTAGGAGTTGTAGTAGGCTGCAGAACATTCACATTTCATCTGTTAGGCTTTCCAATGCCG TTGTTCTAGCACTTACAGCTGCGAACTTGAGGGGTCTGCGCATGCTTTCTCTTGTGCTGGGAGCCGACATCACTGATGCATCTGTTGCTGCCATTTCGTC ATGTTATTCAAAACTAGAACTTCTCGACCTCAGTGGGTCTAGCATTAGTGATAGTGGTATTGGAATGATCTGCAACGTATTTCCTGGAACATTGTCAAGA CTGCTCCTAGCTCTTTGTCCTAACATCACTTCCAGTGGAATTCAGTTTGCTACAGCTCAGTTACCTCATCTTGAACTCATTGATTGTGGCTTGACAATTT GTGACCCAAGTTCTGATTATCCAACCAGCGACGGGAACAGCGACTTTGAGTTGCAGACGACATTTGAAAACAAATTGCACCTCGTATATCAGAAGCTGAT TATCAAGCATGCCCGGCTGAAAAAGCTCAGTCTATGGGGCTGTTCTGGTTTGGATGCACTATACCTTAATTGTCCAAAACTCAATGATCTGAACCTCAAC TCCTGTAGAAACTTGCATCCAGATTGCTCCTTGAATGCCCGAGTTTGGAAAGCATTCATGCATCAGGTGGACAATGATAATAGCTGCAGTACTCCATCTG GCAAATCTAATTATCCCAACAAAAGGACCTTGGAAGGCTCATCAAAGAGGGTATGGGTGCCCTACGAGCTTGGACAGCAGCTGCAGCATCAGGGTGGCGG CGATGATAACTATAAGAAGAGAAGAATAGTGGGGAGTAGTAGGTCTTGCAATGTAGTTGTAGAATAA
AA sequence Show only first row Show all	>Lus10018769 pacid=23176249 polypeptide=Lus10018769 locus=Lus10018769.g ID=Lus10018769.BGIv1.0 annot-version=v1.0 MDARCDSPEVEVFGSELDLEGSGSGGLPSSLMWEVLKRLPPAGLMAAATVCKGWRDTAKGLWRAAEELRLIVPPRSQLGLVGSVLQKCPGLVRLSLRMES DVEATMLACIAFSCPNLESMEIRMTDAAVNRITGNELGRFVADKRCLTTLKMEGCSNLGGFVLCSSSLSTLWLSHLHSLSKMVFNCPNMREISLGFSPQE NDTTDLVGMVDNLGRSCSRLQNIHISSVRLSNAVVLALTAANLRGLRMLSLVLGADITDASVAAISSCYSKLELLDLSGSSISDSGIGMICNVFPGTLSR LLLALCPNITSSGIQFATAQLPHLELIDCGLTICDPSSDYPTSDGNSDFELQTTFENKLHLVYQKLIIKHARLKKLSLWGCSGLDALYLNCPKLNDLNLN SCRNLHPDCSLNARVWKAFMHQVDNDNSCSTPSGKSNYPNKRTLEGSSKRVWVPYELGQQLQHQGGGDDNYKKRRIVGSSRSCNVVVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018769 [exp]	0	1
AT2G26610			Transducin family protein / WD...		Lus10006655 [exp]	6.9	0.8484
AT3G56370			Leucine-rich repeat protein ki...		Lus10030526 [exp]	9.9	0.8743
AT3G22790			Kinase interacting (KIP1-like)...		Lus10006606 [exp]	10.6	0.8684
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	12.2	0.8924
AT2G04865			Aminotransferase-like, plant m...		Lus10001737 [exp]	15.5	0.8871
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	17.3	0.8884
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	21.6	0.8697
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	23.5	0.8283
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	27.0	0.8843
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	27.9	0.8846

Compare expression of checked genes

Lus10018769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.