Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06780 604 / 0 GAUT6 galacturonosyltransferase 6 (.1.2) AT2G30575 560 / 0 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT5G47780 472 / 2e-160 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 423 / 8e-141 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 388 / 5e-127 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 322 / 4e-103 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT1G18580 299 / 2e-94 GAUT11 galacturonosyltransferase 11 (.1) AT3G25140 297 / 2e-93 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 294 / 4e-92 GAUT9 galacturonosyltransferase 9 (.1) AT2G20810 292 / 1e-91 GAUT10, LGT4 galacturonosyltransferase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024859 [exp] 1083 / 0 AT1G06780 630 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10014750 [exp] 774 / 0 AT1G06780 611 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10033861 [exp] 727 / 0 AT1G06780 568 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10038739 [exp] 462 / 9e-156 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10041389 [exp] 418 / 3e-139 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 414 / 2e-137 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 414 / 7e-136 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 399 / 6e-127 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 363 / 2e-110 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218900 [exp] 687 / 0 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.016G001700 [exp] 478 / 3e-162 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 441 / 1e-148 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 419 / 7e-139 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 416 / 7e-138 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 399 / 4e-131 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.017G106800 [exp] 306 / 7e-97 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.004G111000 [exp] 303 / 1e-95 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.002G246500 [exp] 298 / 7e-94 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.015G060800 [exp] 296 / 3e-93 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10018773 pacid=23176248 polypeptide=Lus10018773 locus=Lus10018773.g ID=Lus10018773.BGIv1.0 annot-version=v1.0 ATGAAGGCGGCGGCCCGTCGAAGGCAGAGGATTTTCATCCTATGTTTCCTCTCTGTCTCTGTGCTTGCTCCGATCGTCTTCCTCTCCAATGGTGGTGGCA GTTTCTTCTCTTCTTTCGGGCGGAGAGGGTTCGCTCATGACATTTCAAATCTGAAATATAGAGCAGACACCCTGAAGCTCCGTGCAATTGAGGAGGAAGC AAATGAAGGCTTGAAAGAACCACAGCGGATTGTTTACCAACAGAAGGATTTGAGGTCTATTATTCGTTTAGCTACTGTTACTGTCAATAGTCATTCTAAG CAGAAGAGTACTGACGACATGAATGATTCAAGGAAACCCGCCAATACTGGAGAGAAGACTATTCTCTTGAGCAGTAAGAGAAGTCCGAACGACCAAAACA CAAGATCTGCTCCTCAGAAAGGAACAGACGTGAAGATAATGGAGATGCAAGATAAGATCATTCAGGCTAGAGCGTACTTGAGTCTTTCACCACCTGGGAG CAACTCTCACCTAGTCAAAGAATTGAAGCTGCGAATTAAAGAATTAGAACGTCATTCCAGCCGTGTTACCAAAGACACAGATCTACACAGGAGCGCACTA CAGAAATTGAAAGCCATGGAATTCACCTTGTTCAAAGCCAGCCGAGTCTACAAAGACTGTACCGCCATGGCCAAGAAGCTCCGTGCTATGACTTACACTT CCGAGGAACAAGTTCAAGCACATAAAAACGAAGCAACATATCTTCTAAGACTGGCAGCAAGAAGCACACCAAAAGGCTATCATTGCCTTTCCCTGCGGCT GACTTCTGAATACTTTTCCCTGTCACCAGAGGAGAGGCAGTTCCCTAATCAGCAAAGAGTGGATGATCCCAGTCTCCAACATTATGCTGTTTTCTCGGAC AATATTCTGGCTTCTGCAGTAGTTGTGAATTCTACAGTCTCCTCTGTTCAGGATTCAGGAAAGGTCGTTTTCCATGTGGTGACAAATTCCCTGAACCTCC CGGCGATCTCGATGTGGTTCTTGTCATATCCTCCTGGGAACGCTACAATTGACGTCCAGAGCGTTGAAAACTTCCAAGGGTTGTCGGCCAACAACTACAG CTCGATACTGAAGAAGCAAAATTCCAGCGACCCGAGATACACTTCCGAGTTGAACCACCTTCGATTCTATCTTCCAGATTTGTTCCCTAAGTTGAACAAG GTCGTGCTATTTGACCACGACCTCGTGGTGAGAAAGGATCTGTCAGGACTCTGGGATCTCGATTTGAAAGGGAAAGTCAACGGAGCGGTGGAAACTTGCC GTGATGACGGTGACCCTTCTTTCCGGCGTATGGATATGTTAATAAATTTCTCAGATCCGTATGTTGCAAAGAAATTGAATGCAAGAGCATGCACATGGGC ATTTGGGATGAATCTGTTTGACCTTAAAGAGTGGAGGAGACAAGATTTAACTTCTGTCTACCATCACTACTTGAGACTGGGGAGCAAGAGACCAATGTGG AAATCAGGGAGCCTGCCACTAGGGTGGGCGACCTTCTACAACTCAACGGTTGCGATAGACAAAAGATGGCACAGGCTGGGGCTAGGGTACGAGTCAGGGG TGGAGGTTGGTGAAGCAGCGGTGTTACACTATGACGGAGTGATGAAACCATGGCTAGATATCGGGATACCAAAGTACAAGGGTTACTGGACCGCTTTCCT CAACTACGAGAATCCCCATTTCCTGCAATGCAATATACATCAATGA
AA sequence Show only first row Show all	>Lus10018773 pacid=23176248 polypeptide=Lus10018773 locus=Lus10018773.g ID=Lus10018773.BGIv1.0 annot-version=v1.0 MKAAARRRQRIFILCFLSVSVLAPIVFLSNGGGSFFSSFGRRGFAHDISNLKYRADTLKLRAIEEEANEGLKEPQRIVYQQKDLRSIIRLATVTVNSHSK QKSTDDMNDSRKPANTGEKTILLSSKRSPNDQNTRSAPQKGTDVKIMEMQDKIIQARAYLSLSPPGSNSHLVKELKLRIKELERHSSRVTKDTDLHRSAL QKLKAMEFTLFKASRVYKDCTAMAKKLRAMTYTSEEQVQAHKNEATYLLRLAARSTPKGYHCLSLRLTSEYFSLSPEERQFPNQQRVDDPSLQHYAVFSD NILASAVVVNSTVSSVQDSGKVVFHVVTNSLNLPAISMWFLSYPPGNATIDVQSVENFQGLSANNYSSILKKQNSSDPRYTSELNHLRFYLPDLFPKLNK VVLFDHDLVVRKDLSGLWDLDLKGKVNGAVETCRDDGDPSFRRMDMLINFSDPYVAKKLNARACTWAFGMNLFDLKEWRRQDLTSVYHHYLRLGSKRPMW KSGSLPLGWATFYNSTVAIDKRWHRLGLGYESGVEVGEAAVLHYDGVMKPWLDIGIPKYKGYWTAFLNYENPHFLQCNIHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	0	1
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	1.0	0.8909
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	3.5	0.8625
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	3.7	0.8546
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	3.9	0.8724
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	4.5	0.8669
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	4.9	0.8714
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	8.4	0.8762
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10009134 [exp]	9.4	0.8382
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	11.0	0.8426
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	14.7	0.8226

Compare expression of checked genes

Lus10018773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.