Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08770 87 / 5e-21 PRA1.E prenylated RAB acceptor 1.E (.1) AT1G55190 75 / 9e-17 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G04260 75 / 1e-16 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) AT5G05380 73 / 7e-16 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT2G38360 72 / 3e-15 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT1G17700 71 / 3e-15 PRA1.F1 prenylated RAB acceptor 1.F1 (.1) AT3G13720 71 / 5e-15 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT5G01640 70 / 1e-14 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT3G13710 65 / 5e-13 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT2G40380 65 / 8e-13 PRA1.B2 prenylated RAB acceptor 1.B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024861 [exp] 199 / 8e-65 AT1G08770 132 / 2e-38 prenylated RAB acceptor 1.E (.1) Lus10014747 [exp] 147 / 2e-44 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10033859 [exp] 143 / 6e-43 AT1G55190 149 / 1e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10042535 [exp] 99 / 8e-26 AT1G08770 157 / 1e-48 prenylated RAB acceptor 1.E (.1) Lus10021996 [exp] 97 / 9e-25 AT1G08770 162 / 3e-50 prenylated RAB acceptor 1.E (.1) Lus10034363 [exp] 84 / 7e-20 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10005088 [exp] 84 / 8e-20 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10026404 [exp] 82 / 6e-19 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 82 / 1e-18 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219100 [exp] 134 / 1e-39 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 119 / 7e-34 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 116 / 2e-32 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 104 / 1e-27 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.003G035200 [exp] 89 / 4e-22 AT1G55190 161 / 2e-50 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.019G124100 [exp] 79 / 4e-18 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.006G104400 [exp] 75 / 2e-16 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.016G126400 [exp] 74 / 4e-16 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.010G183300 [exp] 60 / 5e-11 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.001G472300 [exp] 52 / 2e-08 AT5G56230 115 / 4e-32 prenylated RAB acceptor 1.G2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10018774 pacid=23176173 polypeptide=Lus10018774 locus=Lus10018774.g ID=Lus10018774.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCTTCTTCTTCTTCGCCTCCGGCGGCATCATACGGCTACGACCCATTCGCATCCTCAACGCCAGCCACCTTCCTCACGCGCGCCGCCTCGA CTTCATCCGCCTTCTTCGCCAGGAGACGTCCATGGCGCGAACTCTTAACCCTCTCTGCCTTCTCCCGCCCTTTCTCCGTCGGGGAAGCCACCGTCCGAAT CAAGCGCAACTCCGCCTACTTCAGCGTCAACTACGCCATGGCGGTCCTCTTCGTCGTCTTCATCAGCCTCCTCTGGCATCCTCTCTCCATGATCGTCTTC CTAATCGTCCTCTGCTTCGCCTGGTTCTTCCTCTTCTTCTTCCGCGACCGGCCCCTCGTCGTCCTCGGCCGAACCGTCGACGACCGATTGGTACTCTCCC TGCTGGGCGCCGCCACGTTGCTCGCGTTGGTTATGACAGGTGGAGGGATTTGGCTGAACGTGTTGGTCTCCGTTTCAATCGGGCTAGGGATTGTCGTATT ACACGCCGCGTTTCGAGGGACGGAAGATTTGTATTTGGACGAATTGGACGGCCACGGCGGCGGTGGGTTGCTGTCGTTCGTCGGCGGCAGTCCTACCAAA AATGGTTACTCTCCAATTTAA
AA sequence Show only first row Show all	>Lus10018774 pacid=23176173 polypeptide=Lus10018774 locus=Lus10018774.g ID=Lus10018774.BGIv1.0 annot-version=v1.0 MASASSSSPPAASYGYDPFASSTPATFLTRAASTSSAFFARRRPWRELLTLSAFSRPFSVGEATVRIKRNSAYFSVNYAMAVLFVVFISLLWHPLSMIVF LIVLCFAWFFLFFFRDRPLVVLGRTVDDRLVLSLLGAATLLALVMTGGGIWLNVLVSVSIGLGIVVLHAAFRGTEDLYLDELDGHGGGGLLSFVGGSPTK NGYSPI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	0	1
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	4.6	0.8955
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	4.9	0.9281
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10002518 [exp]	5.1	0.9081
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	5.3	0.9065
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	5.9	0.9283
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10040484 [exp]	6.0	0.9424
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	6.7	0.9373
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	10.2	0.9183
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	10.2	0.9230
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	10.5	0.9107

Compare expression of checked genes

Lus10018774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.