Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19540 400 / 2e-139 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 189 / 2e-54 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT5G50960 139 / 2e-37 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT3G15870 74 / 2e-14 Fatty acid desaturase family protein (.1) AT2G31360 70 / 3e-13 ADS2 16:0delta9 desaturase 2 (.1) AT3G15850 68 / 2e-12 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT1G06080 65 / 1e-11 ADS1 delta 9 desaturase 1 (.1) AT1G06120 59 / 1e-09 Fatty acid desaturase family protein (.1) AT1G06100 57 / 7e-09 Fatty acid desaturase family protein (.1) AT1G06090 56 / 1e-08 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024867 [exp] 578 / 0 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10043252 [exp] 182 / 5e-52 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019468 [exp] 162 / 3e-48 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10019395 [exp] 161 / 2e-44 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10011951 [exp] 122 / 5e-33 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10027463 [exp] 126 / 1e-32 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1) Lus10039219 [exp] 125 / 2e-32 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10025895 [exp] 117 / 1e-30 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10017773 [exp] 105 / 2e-25 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042600 [exp] 481 / 1e-171 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.005G220500 [exp] 479 / 9e-171 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 186 / 2e-53 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.001G336900 [exp] 124 / 4e-32 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.011G151700 [exp] 75 / 1e-14 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151800 [exp] 75 / 1e-14 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 75 / 1e-14 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.004G080100 [exp] 46 / 3e-05 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10609 [flax] [poplar] ParA NUBPL iron-transfer P-loop NTPase
Representative CDS sequence Show only first row Show all	>Lus10018779 pacid=23176262 polypeptide=Lus10018779 locus=Lus10018779.g ID=Lus10018779.BGIv1.0 annot-version=v1.0 ATGAAAATTGAGGTTTCGACAGAAGGAAGAAGGAAATTGAGTACATGGGACAAACTTGCCTTGTCCACGGCCGTGGCAACGCATTCGTTGACTGTGTACG TACCGTTTTGCTTCAGCTGGAGTTCGTTTTGGTTCGCAGTTTGGCTCTACACCGTCATTGGCTGCTCCGGAGTTTGCCTCTCTTACCACAGACAACTCTC CCACAAGAGCGTCAGAACTCCCAAGTTTCTCGAGTATCCGTTTGCTTACTGCGGCGGCGTTCATGCCCTTCAATGTACTGAATGTAGCACTGAAATGTTT CAAGTTGCACTCCGATACTTGTTGTTTGGCGTAGGAGAAATTCGATCTACCGAGTTGGCTGAAAATTTTGTAGTAAGGCTCGGTGGCGTTCGGCAGTACG CTGGGCCGTTTTCCAGATCAAAGCTACGGCTCGAAGGAGTTAAGGACGTCATCGCCGTTGCTTCTGGCAAAGGAGGCGTCGGCAAATCCACCACTGCTGT AAACCTGGCAGTTGCCCTTGCGAACAAGTGCAATTTGAAGGTGGGCTTGCTTGATGCTGATGTCTATGGACCATCTGTCCCTATGATGATGAAGATCGAC CAGAAGCCGGGTATCACCGAAGACAGAAAGATGATACCTATTGAGAACTATGGAGTTAGATGCATGTCAATGGGATTCCTGGTAGAGCAGGATGCTCCCA TCGTGTGGAGAGGCCCTATGGTCATGAGTGCTCTTGAGAAAATGACAAGGGGAGTCAGCTGGGGAAATCTCGACATTCTCGTGGTGGATATGCCCCCTGG AACTGGTGATGCTCAGCTTACCATAACCCAAAGCCTACAGTTATCAGGTGCTGTAATTATTTCAACACCACAGGATATTGCATTGCTGGATGCTCGAAGA GGAGTTAAAATGTTCTCCAAAGTGGAGGTTCCTATTCTAGGGTTCATAGAGAACATGAGTTGCTTCAAATGTCCACATTGCGATGAACCTTCGTACATTT TCGGCAAAGGGGGAACTCAAAAGATGGCTGATACAATGGGTTACCATTTCATTGGTGAGATACCAATAGAAGTGGATATCAGGACGTGCTGTGATAACGG TACACCTATCGTGGTCTCATCACCCGATTCTGCTGTCTCGAAAGCCTATGGCGATGCTGCCCGGAGTATCGTCAGCAAGCTTGAAGATTTGGCCAAGGGG ACAACTTTCTCGCCGGAGATTAATCTGTGA
AA sequence Show only first row Show all	>Lus10018779 pacid=23176262 polypeptide=Lus10018779 locus=Lus10018779.g ID=Lus10018779.BGIv1.0 annot-version=v1.0 MKIEVSTEGRRKLSTWDKLALSTAVATHSLTVYVPFCFSWSSFWFAVWLYTVIGCSGVCLSYHRQLSHKSVRTPKFLEYPFAYCGGVHALQCTECSTEMF QVALRYLLFGVGEIRSTELAENFVVRLGGVRQYAGPFSRSKLRLEGVKDVIAVASGKGGVGKSTTAVNLAVALANKCNLKVGLLDADVYGPSVPMMMKID QKPGITEDRKMIPIENYGVRCMSMGFLVEQDAPIVWRGPMVMSALEKMTRGVSWGNLDILVVDMPPGTGDAQLTITQSLQLSGAVIISTPQDIALLDARR GVKMFSKVEVPILGFIENMSCFKCPHCDEPSYIFGKGGTQKMADTMGYHFIGEIPIEVDIRTCCDNGTPIVVSSPDSAVSKAYGDAARSIVSKLEDLAKG TTFSPEINL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10018779 [exp]	0	1
AT3G61113			Ubiquitin related modifier 1 (...		Lus10041378 [exp]	4.0	0.9106
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	4.2	0.9104
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	6.5	0.8881
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	6.9	0.9066
AT5G11680			unknown protein		Lus10027000 [exp]	7.0	0.9055
					Lus10029247 [exp]	13.0	0.8467
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	14.6	0.9084
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	15.5	0.9086
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10017003 [exp]	16.2	0.8539
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	17.3	0.8890

Compare expression of checked genes

Lus10018779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.