Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01350 530 / 0 QPT quinolinate phoshoribosyltransferase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018781 [exp] 694 / 0 AT2G01350 558 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4) Lus10024868 [exp] 598 / 0 AT2G01350 536 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G128900 [exp] 577 / 0 AT2G01350 551 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4) Potri.010G113500 [exp] 292 / 4e-99 AT2G01350 271 / 3e-91 quinolinate phoshoribosyltransferase (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01729 [flax] [poplar] QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain CL0105 [flax] [poplar] Hybrid PF02749 [flax] [poplar] QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018780 pacid=23176298 polypeptide=Lus10018780 locus=Lus10018780.g ID=Lus10018780.BGIv1.0 annot-version=v1.0 ATGACCGGGCTTGTTTTCAGTTCTACCTTTGTCCTACCCCAATCGAATCGGACATCAAGGCTAGTCGTGAAAATGTCTGCAACCAAAGCAATAAATCCCT CTTCTAGAACAGTTTTCAAGTCAATGGCGATAAAGCCTCCTTCACATCCCACTTATGATATGACAGCCATAATCAAGCAAGCCCTGGCTGAAGATGCTGG TAACATAGGAGATGTGACTTGCATGGCAACCATTCCTGAAGATATGGAAGTAGAAGCCCATTTCCTAGCTAAGGAAGATGGTATTGTTGGCGGTGTTGCT CTGGCAGAGATGATATTTGGCGAAGTTGATCCTTCTTTAAAGGTGGAATGGTCACGAAGTGATGGAGATTCTGTCCATAAGGGACTGCAGTTTGGGAAAG TATCTGGAACGGCCCACAACATAGTTGTAGCTGAGAGGGTGGTTCTGAACTTTATGCAACGAATGAGCGGGATAGCAACCCTGACCAAGGCAATGGCTGA TGCTGCACATCCCGCTTGCATTTTGGAGACTCGGAAAACAGCTCCCGGCTTACGCTTGTTCGACAAATGGGCGGTTTTAATTGGTGGAGGAAGAAACCAC AGGATGGGGCTTTTTGATATGGTCATGATTAAAGATAATCATATATCCATCGCTGGAGGCATTATAAATGCAATCAAATCTGTGGATCGGTACTTGGAGG AAAAGAACCTTCAAATGGAAGTGGAGGTTGAGACCAGGACACTTGAAGAAGTGAACGAGATATTGCAGTACACATCTCATACAAAGTCGGCCTTGTCTCG AATAATGTTGGATAATATGGTAGTACCACTGCCAGATGGAGATGTTGATGTATCTATGCTTAAGGATGCTGTAGCATTGATTGACGGGAAATTTGAAACC GAGGCGTCGGGAAATGTTACTCTCGAGACTGTACACAAAATTGGACAGACTGGTGTAACCTTCATTTCCAGCGGGGCTCTTACACATTCTGTGAGAGCAC TGGACATCTCCTTGAAAATTGACACCGACTTGGCCCTCAAAGTTGGAAGGCGTACGAAAAGGGCGTGA
AA sequence Show only first row Show all	>Lus10018780 pacid=23176298 polypeptide=Lus10018780 locus=Lus10018780.g ID=Lus10018780.BGIv1.0 annot-version=v1.0 MTGLVFSSTFVLPQSNRTSRLVVKMSATKAINPSSRTVFKSMAIKPPSHPTYDMTAIIKQALAEDAGNIGDVTCMATIPEDMEVEAHFLAKEDGIVGGVA LAEMIFGEVDPSLKVEWSRSDGDSVHKGLQFGKVSGTAHNIVVAERVVLNFMQRMSGIATLTKAMADAAHPACILETRKTAPGLRLFDKWAVLIGGGRNH RMGLFDMVMIKDNHISIAGGIINAIKSVDRYLEEKNLQMEVEVETRTLEEVNEILQYTSHTKSALSRIMLDNMVVPLPDGDVDVSMLKDAVALIDGKFET EASGNVTLETVHKIGQTGVTFISSGALTHSVRALDISLKIDTDLALKVGRRTKRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	0	1
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	1.0	0.9632
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015709 [exp]	2.8	0.9561
AT5G58160			actin binding (.1)		Lus10035830 [exp]	3.7	0.9461
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	4.2	0.9498
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	6.0	0.9531
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	7.7	0.9513
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	12.1	0.9533
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	12.1	0.9488
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	12.6	0.9385
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	12.7	0.9431

Compare expression of checked genes

Lus10018780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.