Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16430 429 / 2e-147 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 249 / 2e-76 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G01260 158 / 2e-42 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G32640 141 / 3e-36 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 140 / 5e-36 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 136 / 2e-34 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 124 / 8e-31 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT4G00870 121 / 6e-30 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 75 / 2e-14 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57150 72 / 4e-14 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024871 [exp] 790 / 0 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 178 / 1e-49 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 174 / 5e-48 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10000037 [exp] 135 / 7e-37 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 136 / 4e-35 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 136 / 2e-34 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 136 / 3e-34 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 134 / 9e-34 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 122 / 5e-30 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042000 [exp] 527 / 0 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G221100 [exp] 524 / 0 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 193 / 7e-55 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G172101 [exp] 161 / 2e-43 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G176900 [exp] 159 / 2e-43 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 152 / 7e-41 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 137 / 1e-35 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G092200 [exp] 138 / 5e-35 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 135 / 6e-34 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G083500 [exp] 132 / 9e-34 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018787 pacid=23176210 polypeptide=Lus10018787 locus=Lus10018787.g ID=Lus10018787.BGIv1.0 annot-version=v1.0 ATGGGGGAGAATTTCTGGTCTAGCAGCGACGAAAAAGCTACGGCGGAGTCTATACTAGGTAGCGAGGCTTGTGAGTTCTTGATTTCGTCGAATTCGAAAC TTCCGTCCACTGAATTGGTCAGCTCACCAAGCAATCTGGGCTTGCAACAGGGTTTGCACCAGCTTGTGGAAGGTACTGAGTGGAACTATGTCATATTCTG GCATGCCTCCGCTACAGAATCTTCTAGTGTTCATCTCTTGACTTGGGGGGGCGGGATTTGTCGCGATCCGAAATCCGCGTCCGGTGGGAAATTGGAAGGA GGAGGGGAGAAGAAGAGGGAGGAGGCCAAGAAGCTCGTGCTTCAGAAGCTGCGTTCTCTCGGTAGTACTACTCGTGTAGTAGTTAGCTTGGACGGGGTTT CGGATGTCGAAATGTTCTATCTTGCCTCGATGTATTTCCGATTCTGGTCGGATTCGACCACAAGTCATGGTGCTGTGGAGTCGTACAAGTCCGGCCGGTC GATTTGGGTGTCTGATAGGGCGAATTGTTTGGACCAGTATCAGCTAAGGTCTGTTCTTGCTGAATCTGCCGGTTTCCAGACTGTTGTGTTTGTACCGGTT AAGTCCGGGGTGTTAGAGCTTGGTTCAGTCAAGCAGATTTATGAAGAGTCTAGTCTTGTTAAGAGTGCTGCAACCATCTTTGGAGAGAGTACTAACAAGG TTTGTCCGAAGATATTCGGTCGTGAGTTAAGCCTAGGCAGCTCGAAACCGAGGTCGATGAGCATCAGCTTCTCGCCCAAAGTTGAGAACGAGCTGGTTTT CAATTCGGATTCCTATACGATACAGGAGCTTAATGCTGGTCAAGTTTATGGAAGTAGTTCCAACGGCTGCTCTGGTTCTGGTACTGCTGAATTGGCTATA GGAGACGAGCGGAAACCGAGGAAGAGAGGAAGGAAGCCTGCTAATGGACGAGAAGAGCCGCTGAACCATGTAGAAGCGGAGAGGCAGAGGAGGGAGAAGC TGAACCAGAAATTCTATGCGTTGAGGGCTATAGTTCCAAACATCTCGAAGATGGATAAGGCGTCTCTGCTTGGTGATGCGATCACTTATATCAACGATCT CCAGGCGAAGATTAAGGTCATGGAGACCGAACCAGGAGGCAACAATAAGCACGGTATGATGCCGGAGATTGATTTCCACCCTCGGCAGGACGATGCGATC GTGACCGTGAGTTATCCTTTGGTGGACCACCCAGTCGGTAGCATCATTGAGAAGTTCAGGGAGCACCAAGTGACAGCACACGAGTGCAATGTTTCGTCAA CCGAGGAAGGTAAGATTGTTCATACGTTCTCGATCCGGACCCAGAGCAGTGCTGCTGAGCAGTTGAAGCAGAAACTGGAAGCTGCCCTCGTTTCGGAATG A
AA sequence Show only first row Show all	>Lus10018787 pacid=23176210 polypeptide=Lus10018787 locus=Lus10018787.g ID=Lus10018787.BGIv1.0 annot-version=v1.0 MGENFWSSSDEKATAESILGSEACEFLISSNSKLPSTELVSSPSNLGLQQGLHQLVEGTEWNYVIFWHASATESSSVHLLTWGGGICRDPKSASGGKLEG GGEKKREEAKKLVLQKLRSLGSTTRVVVSLDGVSDVEMFYLASMYFRFWSDSTTSHGAVESYKSGRSIWVSDRANCLDQYQLRSVLAESAGFQTVVFVPV KSGVLELGSVKQIYEESSLVKSAATIFGESTNKVCPKIFGRELSLGSSKPRSMSISFSPKVENELVFNSDSYTIQELNAGQVYGSSSNGCSGSGTAELAI GDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAIVPNISKMDKASLLGDAITYINDLQAKIKVMETEPGGNNKHGMMPEIDFHPRQDDAI VTVSYPLVDHPVGSIIEKFREHQVTAHECNVSSTEEGKIVHTFSIRTQSSAAEQLKQKLEAALVSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Lus10018787 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Lus10033668 [exp]	14.1	0.7561
AT1G11050			Protein kinase superfamily pro...		Lus10028554 [exp]	23.1	0.8156
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10039857 [exp]	31.4	0.7556
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	46.5	0.7808
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	72.1	0.7526
AT3G28960			Transmembrane amino acid trans...		Lus10023029 [exp]	74.0	0.7607
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10007815 [exp]	86.7	0.7030
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	91.2	0.7472
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	96.1	0.7318
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	105.5	0.7573

Compare expression of checked genes

Lus10018787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.