Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 278 / 1e-84 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 192 / 3e-52 Protein kinase superfamily protein (.1) AT2G30740 152 / 2e-40 Protein kinase superfamily protein (.1) AT2G30730 151 / 2e-40 Protein kinase superfamily protein (.1) AT3G21630 154 / 1e-39 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G06700 147 / 9e-39 Protein kinase superfamily protein (.1.2) AT3G59350 146 / 2e-38 Protein kinase superfamily protein (.1.2.3) AT5G65700 150 / 2e-37 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G49730 148 / 3e-37 Protein kinase superfamily protein (.1.2.3.4) AT1G07650 149 / 5e-37 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032735 [exp] 1088 / 0 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 679 / 0 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 408 / 6e-134 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 321 / 3e-100 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 318 / 4e-99 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016794 [exp] 241 / 2e-73 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 221 / 1e-62 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10041323 [exp] 204 / 5e-57 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037389 [exp] 200 / 2e-55 AT2G33580 202 / 1e-56 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040000 [exp] 545 / 0 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 437 / 2e-145 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 324 / 9e-102 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 311 / 2e-96 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.007G032100 [exp] 311 / 5e-96 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 262 / 2e-78 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 256 / 2e-76 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.009G010300 [exp] 228 / 2e-65 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 192 / 3e-52 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.007G032300 [exp] 182 / 3e-49 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10018788 pacid=23178430 polypeptide=Lus10018788 locus=Lus10018788.g ID=Lus10018788.BGIv1.0 annot-version=v1.0 ATGATCAACAATTTCTTTACATTTCTAATCCTATCTATCGCCGTCCTATTCCTGAACCCGCCTCCATCCGCCGCCACTCAGAACTACTCCGGCAGCTCAG CACTCGACTGCGACGCCGCCGACCAATCCTCCCCCTCCTCTGCTTTTCTCTACACTTGCACCTCCAGTAGTACTACTTCCTCCTCCTGCCAGTCTTTCCT CATCTTCAGATCCTCACTCCTTCACAGCTCCGTCGCCGATATCTCCGCCGTCACTTCTTCAGACGCCGCCAAACTCGCCCATCTTAACGGCGTCCCCAAT CCTCTGTCCAAATTCGTGGCCGGCCAAGACGTAATCGTCCCCGTCAGATGCTCTTGCTCCGGACATAATAGCAGCAGTTACTCCTACTACTACCAAGCCA ACACCAGTTTCACCCTCACGCCCTCCCAGGGGACATACTACATTGTGGCGTCGGAGGTATTCGTTGGATTGGCCACTTGCGCGGCGATTAAGCGTGACAA TCCGTGGCCAGATGTCGGATTGAAACCGGGCATGCAAATTCAGGTCCCTCTCCGATGTGCCTGTCCGGCCAACGATCAGACTTCCAGCGGAGTGAATTAT CTCCTGACGTATCCAATCTCGTCGGACGACAGTCTCACGGAAGTTGCTGAGAGGTTCAATGTAACAGAGAAGAGCATACTGGAAGCGAATAATCTGATGA GAAACGAAACTGGGGTTGTAAAATTTATTTCAGGTACCACAATTTTGATTCCACTTTTAGGGCTTCCCTCGAGTACCATGACCAAAATTCACGACAAGGT TCCTGGAATCGGATCTCCACCGGGGGGCGGACGAAGCAAGAGGTCAAAGGTTAAGATACTCGAGCTCTCCGGCCTTGCGGCTGCCTGCTTCTTGTTGCTA CTGAGCATAATTTCGGGAGCGGTGTTTGTTGCTCGAGCAAAGAGGAGGAAGAGACTAAGGAAGATGAAGAAGGATGTTGGTGAAATGAAGCAAGAGAAGG TTAAAGAAGATCTTCGAGTTGAGATAGCGAGCTGTGAGAGAGCTTTGACAGTGTTTGGGATTGATGAGGTGAAGAAGGGGACTGGGAATTTCAGCCCCAG GAACAAAATCAAGGGGTCTGTTTATTCAGGAGTGTTTGGTGGGAAGGTATTGGCTGTGAAGAAGATGAGTAGAGATATTGATATATCACAGGAGGTCAAT ATTCTGATGAGGATTAACCATTTCAACGTCATAAAGCTCCATGGTGTTTGTGATGACTTGCAGTCTTTCTACCTTGTTTCTGAATACATGGAATTTGGTT GTTTAAAAGAATGGTTAAGAGTAGACAACAGGAATAAGGATGGTGGGAAAGAAGAAGAAGAAGAGAATGAAGGGAAGTGGGAGACAAGGGTTAAGATTGG TCTAGACATTGCCAATGGCCTTCACTATCTCCACAACTTCACCGAGCCAGCTTATGTTCATCAGGACATCAAGAGCAGCAACGTCTTGCTAAACAGTGAC CTTAGGGCCAAGATCACCAATTTCAGCCTCGCAAAGTCTGCTGCTGCCAGGGACTCAGCAGCTAACACGGTACACTTGATTGGGACACGAGGGTACATGG CTCCAGAGTACATAGAGACCGGAGAGGTTACCCCTAAGGTTGATGTCTATGCCTTTGGAGTCGTGCTGTTAGAGCTGATCACTGGGAAAAAAGCTGTATT GGTTTTGGGTGATGGGAAGGTGACTCTGCTGTCGACTACAATGATTGCTTTGATGGAGAAGGGAAGTTTTGAATCTGAACTGGGTTCGTACGTTGATCCT CGTTTGGGAGAAGCTGGGATGGAAATGGGTCTTGCTCTGTTTAAAGTGAGCCTGGCTTGCCTGAGAAGGGAAGCAGAATGTAGGCCGAGTATGGAGGAGG TAGTCTCCAGCCTGGTTAAAATCCTGACAGATATCAAGAGATCAAAACCATTGAGTGATGACTCTATTACTGATCAATCAGCCACGCTTAGACGTTATGG TAATGATTGGACTGTTGAAACTGCTTCGTGGTGA
AA sequence Show only first row Show all	>Lus10018788 pacid=23178430 polypeptide=Lus10018788 locus=Lus10018788.g ID=Lus10018788.BGIv1.0 annot-version=v1.0 MINNFFTFLILSIAVLFLNPPPSAATQNYSGSSALDCDAADQSSPSSAFLYTCTSSSTTSSSCQSFLIFRSSLLHSSVADISAVTSSDAAKLAHLNGVPN PLSKFVAGQDVIVPVRCSCSGHNSSSYSYYYQANTSFTLTPSQGTYYIVASEVFVGLATCAAIKRDNPWPDVGLKPGMQIQVPLRCACPANDQTSSGVNY LLTYPISSDDSLTEVAERFNVTEKSILEANNLMRNETGVVKFISGTTILIPLLGLPSSTMTKIHDKVPGIGSPPGGGRSKRSKVKILELSGLAAACFLLL LSIISGAVFVARAKRRKRLRKMKKDVGEMKQEKVKEDLRVEIASCERALTVFGIDEVKKGTGNFSPRNKIKGSVYSGVFGGKVLAVKKMSRDIDISQEVN ILMRINHFNVIKLHGVCDDLQSFYLVSEYMEFGCLKEWLRVDNRNKDGGKEEEEENEGKWETRVKIGLDIANGLHYLHNFTEPAYVHQDIKSSNVLLNSD LRAKITNFSLAKSAAARDSAANTVHLIGTRGYMAPEYIETGEVTPKVDVYAFGVVLLELITGKKAVLVLGDGKVTLLSTTMIALMEKGSFESELGSYVDP RLGEAGMEMGLALFKVSLACLRREAECRPSMEEVVSSLVKILTDIKRSKPLSDDSITDQSATLRRYGNDWTVETASW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10018788 [exp]	0	1
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	1.4	0.9848
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10032950 [exp]	1.7	0.9796
					Lus10009731 [exp]	2.6	0.9736
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10007910 [exp]	3.5	0.9751
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	3.5	0.9812
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	4.5	0.9792
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10041951 [exp]	5.1	0.9678
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	7.1	0.9760
AT3G05950			RmlC-like cupins superfamily p...		Lus10032017 [exp]	8.0	0.9698
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	8.2	0.9625

Compare expression of checked genes

Lus10018788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.