Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19270 567 / 0 DA1 DA1 (.1) AT4G36860 512 / 9e-179 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT2G39830 423 / 5e-144 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66620 304 / 2e-96 DAR6 DA1-related protein 6 (.1) AT5G66610 299 / 3e-95 DAR7 DA1-related protein 7 (.1.2) AT5G66630 273 / 8e-84 DAR5 DA1-related protein 5 (.1) AT5G17890 273 / 9e-81 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 236 / 3e-72 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032736 [exp] 837 / 0 AT1G19270 628 / 0.0 DA1 (.1) Lus10010033 [exp] 718 / 0 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 712 / 0 AT1G19270 646 / 0.0 DA1 (.1) Lus10022486 [exp] 539 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 493 / 2e-171 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10040258 [exp] 426 / 2e-142 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 399 / 1e-134 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 239 / 3e-77 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132700 [exp] 681 / 0 AT1G19270 669 / 0.0 DA1 (.1) Potri.014G039900 [exp] 681 / 0 AT1G19270 654 / 0.0 DA1 (.1) Potri.005G128900 [exp] 539 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 534 / 0 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 518 / 0 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.010G197500 [exp] 425 / 3e-145 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 153 / 2e-42 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 91 / 7e-22 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF12315 [flax] [poplar] DA1-like Protein DA1 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10018789 pacid=23178434 polypeptide=Lus10018789 locus=Lus10018789.g ID=Lus10018789.BGIv1.0 annot-version=v1.0 ATGCATGATCAGGCAGCAAGACGGATTATGGGTTGGCTTAGTAAGATCTTTAAAGGGTCAAACCATAGCATTTCGGAGGGGCATTACCGCAACAATTATG GTGAAAGCCCTAATCTGCATGCACCATCTGCATCACAGTTTTGGAAAGTCTATTTAACAACCTTGTATGACTATGATGCTGGGGATGTATGGGTGGATCA TGACAGTGAAGAGATAGATCGTGCTATTGCACTCTCACTTTTAGAGGAGAGTCAGCAGGGAAAACCTGTGATTGATAGCGAGACTCAGTTACAAGAAGAT GAACAACTCGCTAGAGCTTTACATGAAAGCTTAAATGTTCAACCGCCTCCTCCCCCTCGACGTAGCAATCCAAATGTATATCCAGGAAATGCATATCACC AACCAGCCCCACTCCATTTTCCTACAGGGTTCAGGATCTGTGCTGGTTGCAATCATGAAATTGGAGCTGGAAGATTTCTACATTGTCTAAATGCATACTG GCACCCAGAATGTTTCCGTTGCCATGCGTGCAATCTACCAATTTCTGATTATGAGTTCTCAATGTCTGGTAATTACCCCTATCACAAAACTTGCTACAAG GACCGCTACCATCCCAAATGTGATGTCTGCAAACACTTTATTCCAACGAACCTGGCTGGACTTATTGAATATAGAGCGCATCCATTTTGGAACCAGAAAT ACTGCCCTACTCACGAACATGATGGTACTCCAAGATGTTGCAGCTGCGAGAGAATGGAGATTGCCATGTTTATTCAGCCTAAAGATACAGGATATGTTCC TCATAACGATGGCCGGAAGCTCTGTCTGGAGTGCCTGGATTCGACAGTGATGGATACGAGCCAATGCCGGCCCCTTTACATGGACATACAGCAATTTTAC GAAAGCTTAAATATGAAGGGCCATTATCACATGCCAGAAACCAGAGGACTATGCCTTTCTGAGGAACAAACAATCAGCACGGTATTACGGAGACCAAGGT TTGGAGGAGGACAACGGTCCATGAACATGATAGCGGAACCTTACAAATTGACTCGCCGATGTGATGTCACTGCCATTCTTATATTATATGGTCTCCCAAG GTTGCTTACCGGATCGATCCTCGCTCATGAGATGATGCATGCTTGGATGCGACTCAAAGGTTACCAATCTCTGAGTCAAGACGTTGAAGAGGGGATTTGC CAGGTCCTGGCACACATGTGGTTAGACACACAACTAATCTTTGCATCATCGTCGTCAGCAAACAGTTCTGGACCTCCGTTCCAGAAGAAACTTGGGGCCT TCTTCAAGCATCAAATTGAGTCTGACAGTTCTCCTGTGTACGGAGATGGATTCAGAGCCGGTCAGCAAGCCGTTGGTAAGTATGGGCTCCAGAGAACTCT TGAACATATTCGAATGACTGGGAGGTTCCCCTTCTGA
AA sequence Show only first row Show all	>Lus10018789 pacid=23178434 polypeptide=Lus10018789 locus=Lus10018789.g ID=Lus10018789.BGIv1.0 annot-version=v1.0 MHDQAARRIMGWLSKIFKGSNHSISEGHYRNNYGESPNLHAPSASQFWKVYLTTLYDYDAGDVWVDHDSEEIDRAIALSLLEESQQGKPVIDSETQLQED EQLARALHESLNVQPPPPPRRSNPNVYPGNAYHQPAPLHFPTGFRICAGCNHEIGAGRFLHCLNAYWHPECFRCHACNLPISDYEFSMSGNYPYHKTCYK DRYHPKCDVCKHFIPTNLAGLIEYRAHPFWNQKYCPTHEHDGTPRCCSCERMEIAMFIQPKDTGYVPHNDGRKLCLECLDSTVMDTSQCRPLYMDIQQFY ESLNMKGHYHMPETRGLCLSEEQTISTVLRRPRFGGGQRSMNMIAEPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWMRLKGYQSLSQDVEEGIC QVLAHMWLDTQLIFASSSSANSSGPPFQKKLGAFFKHQIESDSSPVYGDGFRAGQQAVGKYGLQRTLEHIRMTGRFPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	0	1
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	2.4	0.9063
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	2.8	0.9281
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	4.2	0.9051
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	4.9	0.8873
AT3G57810			Cysteine proteinases superfami...		Lus10015803 [exp]	6.2	0.8812
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	6.3	0.8828
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	6.9	0.8890
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	7.4	0.8822
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	7.4	0.8913
AT4G39230			NmrA-like negative transcripti...		Lus10042312 [exp]	7.9	0.8882

Compare expression of checked genes

Lus10018789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.