Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42650 614 / 0 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15440 255 / 4e-80 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT3G10560 47 / 2e-05 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT5G09970 47 / 4e-05 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT1G13150 47 / 4e-05 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT3G10570 45 / 8e-05 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT5G04630 45 / 0.0001 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G26330 43 / 0.0004 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G61320 43 / 0.0005 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT2G30490 43 / 0.0006 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032739 [exp] 662 / 0 AT5G42650 496 / 8e-173 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 447 / 2e-153 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 415 / 5e-141 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10031540 [exp] 363 / 2e-120 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 350 / 1e-115 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 335 / 9e-110 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 332 / 7e-109 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 332 / 1e-108 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 320 / 6e-104 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G130700 [exp] 668 / 0 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 650 / 0 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 477 / 2e-165 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 476 / 4e-165 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 470 / 1e-162 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 409 / 3e-139 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G155800 [exp] 365 / 1e-121 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.011G155600 [exp] 55 / 1e-07 AT5G36110 388 / 4e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G440200 [exp] 49 / 4e-06 AT5G36110 382 / 6e-129 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003100 [exp] 49 / 6e-06 AT5G36110 424 / 2e-145 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018791 pacid=23178441 polypeptide=Lus10018791 locus=Lus10018791.g ID=Lus10018791.BGIv1.0 annot-version=v1.0 ATGGCTTTCTCTGCTCTCAACAACTTGGTGCCCGTCAACCCAAAGACACTCTCTCCATCACCAAAATCAACACCACCAAACACTTTCTCCAACCTCCGTA GAGTCTCCGCTTTCCGTCCAATTAAGGCCTCTCTCTTCGGTGAGTCTCCGATCAAAATCCCAGGGATCACACCCCAGCCCCCTCCTTCCTCCTCCGATGA AACCACTCTCCCTATCCGCCAGATTCCTGGAGACTACGGTCTCCCTGGAATTGGACCTATCCAAGATCGTCTCGATTACTTCTACAACCAAGGCCGCGAA GAATTCTTCAAGTCAAGGCTCCAGAAATACAAGTCAACAGTCTACAGAGCCAACATGCCTCCTGGCCCATTCATCGCTTCCGATCCTCGTGTCATCGTCA TCCTCGACGCCAAGAGCTTCCCTGTTCTCTTCGACATGTCCAAAGTCGAGAAGAAGGATCTCTTCACTGGAACTTACATGCCCTCTACTGAGCTCACCGG CGGTTACCGTATCCTCTCCTACCTCGACCCCTCCGAGCCCAATCACACCAAGCTCAAGCAACTTCTTTTCAATCTCATAAAGAACCGCCGTGATTACGTC ATTCCTGAATTCTCTTCTTCATTCACCGACCTCTGCGAGGTTGTTGAATACGATTTGGCTACTAAAGGGAAAGCTGCGTTCAACGACCCCGCCGAGCAAG CCGCTTTCAATTTCCTCTCACGCGCCTTCTTCGGTGTCAAGCCGATCGACACTCCGTTGGGGAAAGACGCGCCGTCCTTGATTTCAAAATGGGTCCTGTT CAACCTTGCTCCGATTCTCAGCGTCGACAGCCCCCTCCCCCCCGCCGCTGGAGTTGTGCGTGACGAGGCAGAAAAGTCCGGGATCTCGCGGGACGAAGCT TGCCACAACATCCTCTTCGCCGTGTGTTTCAACTCATGGGGAGGGTTCAAGATCCTGTTCCCAAGCCTGATGAAATGGATCGGGCGGGCAGGGTTGGAGC TCCACACCAAACTAGCGCAAGAAATCAGATCTGCAATCCAATCGACGGGCGGAGGGAAAATCACGATGGCGGCGATGGAACAGATGCCGCTGATGAAGTC CGTGGTATACGAAACGCTGCGTATCGAGCCGCCGGTTGCGCTGCAGTACGGGAAGGCGAAGAAGGATTTCATATTGGAGAGCCACGAGGCGGCGTACCAA GTGAAAGAAGGGGAGATGCTGTTCGGGTACCAGCCGTTCGCTACAAAAGACCCGAAGATATTTGACCGACCGGAGGAGTTCGTGGCGGACCGGTTCGTCG GGGAGGAAGGGGAGAAGCTGCTGCAGCACGTGATGTGGTCGAACGGGCCGGAGACGGAGACGCCGAGCGTGGCGAACAAGCAGTGCGCCGGGAAGGATTT CGTGGTGATGGCGGCAAGGCTGTTTGTCGTGGAGCTGTTTAAGAGGTACGACTCGTTTGATATTGAGGTGGGAACGTCGTCGCTTGGCGCTACAATAACC TTGACTTCGCTTAAGAGGTCAACGTTTTGA
AA sequence Show only first row Show all	>Lus10018791 pacid=23178441 polypeptide=Lus10018791 locus=Lus10018791.g ID=Lus10018791.BGIv1.0 annot-version=v1.0 MAFSALNNLVPVNPKTLSPSPKSTPPNTFSNLRRVSAFRPIKASLFGESPIKIPGITPQPPPSSSDETTLPIRQIPGDYGLPGIGPIQDRLDYFYNQGRE EFFKSRLQKYKSTVYRANMPPGPFIASDPRVIVILDAKSFPVLFDMSKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPNHTKLKQLLFNLIKNRRDYV IPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAAFNFLSRAFFGVKPIDTPLGKDAPSLISKWVLFNLAPILSVDSPLPPAAGVVRDEAEKSGISRDEA CHNILFAVCFNSWGGFKILFPSLMKWIGRAGLELHTKLAQEIRSAIQSTGGGKITMAAMEQMPLMKSVVYETLRIEPPVALQYGKAKKDFILESHEAAYQ VKEGEMLFGYQPFATKDPKIFDRPEEFVADRFVGEEGEKLLQHVMWSNGPETETPSVANKQCAGKDFVVMAARLFVVELFKRYDSFDIEVGTSSLGATIT LTSLKRSTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10018791 [exp]	0	1
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	11.3	0.7865
AT2G46490			unknown protein		Lus10019579 [exp]	13.7	0.7401
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	24.2	0.7665
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	27.6	0.7639
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10006369 [exp]	30.7	0.7633
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	32.1	0.7614
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	32.2	0.7461
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000097 [exp]	33.8	0.7381
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10035117 [exp]	40.9	0.7424
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	48.7	0.6852

Compare expression of checked genes

Lus10018791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.