Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19390 168 / 2e-51 Uncharacterised protein family (UPF0114) (.1) AT5G13720 137 / 2e-39 Uncharacterised protein family (UPF0114) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032866 [exp] 287 / 2e-97 AT4G19390 166 / 6e-50 Uncharacterised protein family (UPF0114) (.1) Lus10037258 [exp] 158 / 2e-47 AT4G19390 245 / 3e-81 Uncharacterised protein family (UPF0114) (.1) Lus10035674 [exp] 150 / 3e-41 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019743 [exp] 140 / 2e-40 AT5G13720 340 / 6e-119 Uncharacterised protein family (UPF0114) (.1) Lus10029480 [exp] 138 / 5e-39 AT5G13720 328 / 2e-113 Uncharacterised protein family (UPF0114) (.1) Lus10016380 [exp] 134 / 2e-37 AT5G13720 317 / 2e-108 Uncharacterised protein family (UPF0114) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039000 [exp] 243 / 3e-80 AT4G19390 163 / 1e-48 Uncharacterised protein family (UPF0114) (.1) Potri.004G234600 [exp] 152 / 2e-45 AT4G19390 246 / 1e-81 Uncharacterised protein family (UPF0114) (.1) Potri.009G057300 [exp] 144 / 8e-42 AT5G13720 308 / 8e-106 Uncharacterised protein family (UPF0114) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03350 [flax] [poplar] UPF0114 Uncharacterized protein family, UPF0114
Representative CDS sequence Show only first row Show all	>Lus10018793 pacid=23178425 polypeptide=Lus10018793 locus=Lus10018793.g ID=Lus10018793.BGIv1.0 annot-version=v1.0 ATGGGGCCTGCCCCTGTCCAGGCATCATCATCAACATCATCAGCTGCTGCTGCTACTGATCATTCCAACACTAATTCGTCAGTAGACTTAATTGAGACTG CGGAGCCATGGATTGATGTTGAAGATCTGGGGTCTTCTTTGGTTAAGTTGTTAATGTTGACTGCTAGACCTGCTGCAGCTGTTGTAGAAGAAAATAGGCA CAAGGAAGGGAAGTTTGAGACGATACAGATGGTGATAGAGAGAAGCATATTTGATTGTCGCTTCTTTGCCCTTTTGGGTGTTGCTGGATCCTTGATTGGC TCTGTTTTATGCTTCATTGAAGGTTGTTTCCATGTCCTAGACTCTTACCTTCACTTCTTCCACACTCTGTCTTCTACAAGCTTGGATCATGGACTTGTGA TGAAGCTGCTTATTGAAGCTATTGACATGTTTTTGGTGGGAACCGCCATGTTCGTATTTGGCGTTGGGCTACATGCCATGTTTATTGGCTCCAAGGATTC CAAACACTCTTGGCTACCAGCTTCTAAGTTATTTGGCCTCTTCAACTTGAAGAACCTTCCAGAATGGGTGGAAACAGAGTCGGTTTCAGAGGCAAAGTCC AAAATCGGACATGCAGTGATGATGATGCTTCAAGTGGGGCTATTGGAGAAATTCAACAACATACCTTTGGTCAACAGCTTTGACCTTGCCTGCTTTGCTG CTGCGATTCTTGTTTCTTCTGCTTCTACTTTCCTTCTCTCCAAACTCCACACACGACCATGA
AA sequence Show only first row Show all	>Lus10018793 pacid=23178425 polypeptide=Lus10018793 locus=Lus10018793.g ID=Lus10018793.BGIv1.0 annot-version=v1.0 MGPAPVQASSSTSSAAAATDHSNTNSSVDLIETAEPWIDVEDLGSSLVKLLMLTARPAAAVVEENRHKEGKFETIQMVIERSIFDCRFFALLGVAGSLIG SVLCFIEGCFHVLDSYLHFFHTLSSTSLDHGLVMKLLIEAIDMFLVGTAMFVFGVGLHAMFIGSKDSKHSWLPASKLFGLFNLKNLPEWVETESVSEAKS KIGHAVMMMLQVGLLEKFNNIPLVNSFDLACFAAAILVSSASTFLLSKLHTRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19390			Uncharacterised protein family...		Lus10018793 [exp]	0	1
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10042672 [exp]	1.0	0.9039
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10019455 [exp]	2.0	0.8393
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	5.0	0.8329
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	6.2	0.8482
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	6.2	0.8533
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10037792 [exp]	6.9	0.8084
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027415 [exp]	10.5	0.8192
					Lus10030151 [exp]	16.6	0.8241
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10014269 [exp]	20.0	0.7997
AT5G48290			Heavy metal transport/detoxifi...		Lus10016062 [exp]	20.2	0.8221

Compare expression of checked genes

Lus10018793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.