Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36830 127 / 5e-37 HOS3-1 GNS1/SUR4 membrane protein family (.1) AT1G75000 123 / 2e-35 GNS1/SUR4 membrane protein family (.1) AT3G06470 47 / 6e-07 GNS1/SUR4 membrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016797 [exp] 132 / 2e-39 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1) Lus10022493 [exp] 125 / 8e-36 AT4G36830 374 / 7e-131 GNS1/SUR4 membrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031500 [exp] 126 / 2e-36 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1) Potri.014G040500 [exp] 122 / 5e-35 AT4G36830 323 / 5e-111 GNS1/SUR4 membrane protein family (.1) Potri.003G019700 [exp] 52 / 2e-08 AT3G06470 315 / 2e-108 GNS1/SUR4 membrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01151 [flax] [poplar] ELO GNS1/SUR4 family
Representative CDS sequence Show only first row Show all	>Lus10018795 pacid=23178429 polypeptide=Lus10018795 locus=Lus10018795.g ID=Lus10018795.BGIv1.0 annot-version=v1.0 ATGCTCCTGACCTCATTCCTCTGGCTCGAATTCTCCCAGTCCTTCCAGGTCCTCGCCATCCTGTTGACCACGCTCCTGTACGCTGTCGTTTACGGGTACA GATTCTGGACGGCCATTGGACTCCCAGGCGCAAAATTTCCGTTCGTGGTCAATTGCCAGCTTGTGCTCTTGTGCTGCAATCTGGTATGCCATTCTGCGGT GTTGCTGATGCATTTGTCCGGGGCCGGATGTAATGGAATTGGGGCCTGGAGTTTTAATTCCGTGTTGAACGGGGTAATATTGTTGTTGGTATTGAAGTTT TACATCGGAATGAGGTCTCGGCGGTGGAAAAAGGAATCTGGGAATGAAAATATTGACGGCGGAGTGGAGGGTTCTGTCCGGCGGGCGAGAAAGGAAGAGT AG
AA sequence Show only first row Show all	>Lus10018795 pacid=23178429 polypeptide=Lus10018795 locus=Lus10018795.g ID=Lus10018795.BGIv1.0 annot-version=v1.0 MLLTSFLWLEFSQSFQVLAILLTTLLYAVVYGYRFWTAIGLPGAKFPFVVNCQLVLLCCNLVCHSAVLLMHLSGAGCNGIGAWSFNSVLNGVILLLVLKF YIGMRSRRWKKESGNENIDGGVEGSVRRARKEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018795 [exp]	0	1
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018796 [exp]	1.0	0.9273
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	6.2	0.8658
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	11.3	0.8589
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	16.6	0.8145
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	19.2	0.8287
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	21.5	0.8652
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	23.3	0.7902
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	23.4	0.7697
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	26.4	0.7759
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	27.1	0.8115

Compare expression of checked genes

Lus10018795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.