Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36830 161 / 2e-49 HOS3-1 GNS1/SUR4 membrane protein family (.1) AT1G75000 153 / 2e-46 GNS1/SUR4 membrane protein family (.1) AT3G06460 51 / 4e-08 GNS1/SUR4 membrane protein family (.1) AT3G06470 48 / 5e-07 GNS1/SUR4 membrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022493 [exp] 144 / 6e-43 AT4G36830 374 / 7e-131 GNS1/SUR4 membrane protein family (.1) Lus10016797 [exp] 89 / 6e-22 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1) Lus10030547 [exp] 43 / 4e-05 AT3G06470 330 / 1e-114 GNS1/SUR4 membrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040500 [exp] 182 / 8e-58 AT4G36830 323 / 5e-111 GNS1/SUR4 membrane protein family (.1) Potri.007G031500 [exp] 141 / 7e-42 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1) Potri.003G019700 [exp] 58 / 2e-10 AT3G06470 315 / 2e-108 GNS1/SUR4 membrane protein family (.1) Potri.003G019800 [exp] 45 / 6e-06 AT3G06470 280 / 2e-94 GNS1/SUR4 membrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01151 [flax] [poplar] ELO GNS1/SUR4 family
Representative CDS sequence Show only first row Show all	>Lus10018796 pacid=23178446 polypeptide=Lus10018796 locus=Lus10018796.g ID=Lus10018796.BGIv1.0 annot-version=v1.0 ATGTCGCCGCCGTCGGAGACAAACCCCTTCAAATACTGGTTATCGGAGCAACCCCAGATCGTCAACTTCCGCTGGTCAACAACCCTATGGGGATCCACCT GGTATTTCCTCGTGAACGCCATCTTCATTTACATCCTCGCTGCCGTGACCCTCCATCTCTTCTTATCTCTAATCCTCAACCCCCGCCGAAGAGTCCCCCT CGGTCCGATCCCTGCCTTACATAGCCTCGCCATGTCTCTCATCTCCGCCACCATCTTTCTAGGGACCATACTCTCCGCCGCCTCCGAGATCCGTGACACG CGCTGGTTGTGGACACGACGCACCAAGAACTACAACGCGATCCAGTGGCTCCTCTGCTTCCCGATCGGCACGCGCGCTTCTGGGCGTGTCTTCTTCTGGT CGTACGCCTTCTACCTTTCCCGTTTCCTCCACCTCCTCCCTCCCCCGTCCCCCCCCCCCCCCCCGCACCTCCTTCGCCTCCCCCCGCCGCCGTAG
AA sequence Show only first row Show all	>Lus10018796 pacid=23178446 polypeptide=Lus10018796 locus=Lus10018796.g ID=Lus10018796.BGIv1.0 annot-version=v1.0 MSPPSETNPFKYWLSEQPQIVNFRWSTTLWGSTWYFLVNAIFIYILAAVTLHLFLSLILNPRRRVPLGPIPALHSLAMSLISATIFLGTILSAASEIRDT RWLWTRRTKNYNAIQWLLCFPIGTRASGRVFFWSYAFYLSRFLHLLPPPSPPPPPHLLRLPPPP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018796 [exp]	0	1
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018795 [exp]	1.0	0.9273
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	6.3	0.7721
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	11.3	0.7894
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	13.3	0.8407
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	13.4	0.8426
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	16.1	0.7850
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10007921 [exp]	16.9	0.7712
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10032450 [exp]	17.5	0.8069
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	22.4	0.7684
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10029541 [exp]	22.5	0.7709

Compare expression of checked genes

Lus10018796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.