Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19300 491 / 1e-175 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G50760 465 / 2e-165 GATL2 galacturonosyltransferase-like 2 (.1) AT3G28340 385 / 2e-133 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G06260 378 / 9e-131 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G70090 378 / 2e-130 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT4G02130 376 / 3e-130 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G13250 375 / 9e-130 GATL3 galacturonosyltransferase-like 3 (.1) AT1G24170 376 / 2e-129 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G62660 367 / 2e-126 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 366 / 6e-126 GATL5 galacturonosyltransferase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032728 [exp] 644 / 0 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 543 / 0 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041489 [exp] 386 / 4e-134 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 385 / 1e-133 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10010727 [exp] 375 / 1e-129 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10034012 [exp] 374 / 3e-129 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10012765 [exp] 371 / 3e-128 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10002440 [exp] 374 / 4e-128 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10029215 [exp] 371 / 7e-128 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132900 [exp] 553 / 0 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G040300 [exp] 550 / 0 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 485 / 4e-173 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.005G128000 [exp] 481 / 2e-171 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.010G038300 [exp] 389 / 1e-134 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G192600 [exp] 379 / 7e-131 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.010G129400 [exp] 377 / 7e-131 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 375 / 7e-130 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 373 / 4e-129 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.002G200200 [exp] 371 / 4e-128 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10018801 pacid=23178436 polypeptide=Lus10018801 locus=Lus10018801.g ID=Lus10018801.BGIv1.0 annot-version=v1.0 ATGCCAGGATTATTATTCCTCTTCCTCTCCCTCTCCCTCATTCCACCTTTGACTTGCTATTCCAATGCCGGCGCCGCCGCCGCTGCCATTTCTCCTTCTT CCCACCGATTCAAGGAAGCTCCCCAGTTCTATAACTCTCCTGACTGCCCCTTGCTCCTCCGCTCCGATGATGATGCCCACATCTTCTGCTCAGATCTCGC CGTCCACGTCGCTATGACCCTCGACACCGCCTACATCCGCGGTTCCATGGCCGCCATCCTTTCCGTCCTTCAGCACTCCTCTTGCCCACAGAACGTTGCC TTCCACTTCGTTGCCTCCGCTTCCGCTAACGCGTTGTACCTACGCGCCACCATCGCTTCCTCCTTCCCTTACCTTAACTTCAAGGTCTACTCCTTCGACG ATTCCTCCGTCGCCCGACTCATCTCCACCTCCATCCGCTCCGCACTGGACTGCCCTCTCAACTACGCCAGAAGCTACTTGGCCAACATACTCCCGTCATG TGTTGGACGAATTGTCTATCTGGATTCTGACTTGGTTTTAGTCGACGACATTGCCAAACTCGCTCAAACCCACCTCGGAGAGACAGCGGTGCTGGCGGCG CCCGAATACTGCAACGCCAACTTCACATCCTATTTCACCACCACTTTCTGGTCCAATCCGTCTCTATCTTTGACCTTCGCGGATAGGAAGGCTTGCTACT TCAATACAGGGGTGATGGTCATCGATCTGGAGAGATGGCGAGAAGGGGACTACACCGCCAAGATCGAGGAGTGGATGGAGATGCAGAAGAGGGTTAGGAT TTACGAGCTGGGTTCTCTGCCTCCCTTCTTGCTGGTGTTCGCCGGGAATATTGTGCCGGTGAATCACCGGTGGAACCAGCACGGTCTTGGAGGGGACAAT TTCAGGGGACTCTGCCGGAATCTGCATCCGGGTCCGGTGAGTCTGTTGCATTGGAGCGGGAAAGGGAAGCCGTGGGCTCGGCTTGATGCCAATCGTCCTT GTCCGTTGGATGCTCTATGGGCTCCTTACGATCTGCTGCAGACTCCCTTCGCTTTAGATTCCTGA
AA sequence Show only first row Show all	>Lus10018801 pacid=23178436 polypeptide=Lus10018801 locus=Lus10018801.g ID=Lus10018801.BGIv1.0 annot-version=v1.0 MPGLLFLFLSLSLIPPLTCYSNAGAAAAAISPSSHRFKEAPQFYNSPDCPLLLRSDDDAHIFCSDLAVHVAMTLDTAYIRGSMAAILSVLQHSSCPQNVA FHFVASASANALYLRATIASSFPYLNFKVYSFDDSSVARLISTSIRSALDCPLNYARSYLANILPSCVGRIVYLDSDLVLVDDIAKLAQTHLGETAVLAA PEYCNANFTSYFTTTFWSNPSLSLTFADRKACYFNTGVMVIDLERWREGDYTAKIEEWMEMQKRVRIYELGSLPPFLLVFAGNIVPVNHRWNQHGLGGDN FRGLCRNLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLQTPFALDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	0	1
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	4.5	0.9643
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	5.6	0.9684
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	5.7	0.9644
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	7.7	0.9653
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	7.9	0.9534
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	10.4	0.9545
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10032236 [exp]	10.8	0.9568
AT2G35860		FLA16	FASCICLIN-like arabinogalactan...		Lus10021247 [exp]	11.1	0.9478
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	12.2	0.9594
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	14.0	0.9640

Compare expression of checked genes

Lus10018801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.