Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75020 534 / 0 LPAT4 lysophosphatidyl acyltransferase 4 (.1.2) AT3G18850 482 / 4e-171 LPAT5 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) AT3G57650 183 / 6e-54 LPAT2 lysophosphatidyl acyltransferase 2 (.1) AT1G51260 157 / 2e-44 LPAT3 lysophosphatidyl acyltransferase 3 (.1) AT4G30580 44 / 0.0002 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032727 [exp] 764 / 0 AT1G75020 530 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Lus10040492 [exp] 176 / 2e-51 AT3G57650 610 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10011298 [exp] 175 / 7e-51 AT3G57650 609 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10042356 [exp] 173 / 4e-50 AT3G57650 611 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10026312 [exp] 173 / 5e-50 AT3G57650 615 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10002556 [exp] 145 / 2e-39 AT1G51260 496 / 8e-176 lysophosphatidyl acyltransferase 3 (.1) Lus10027375 [exp] 144 / 8e-39 AT1G51260 495 / 1e-175 lysophosphatidyl acyltransferase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133100 [exp] 600 / 0 AT1G75020 536 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Potri.014G040600 [exp] 597 / 0 AT1G75020 485 / 3e-172 lysophosphatidyl acyltransferase 4 (.1.2) Potri.T125204 [exp] 519 / 0 AT3G18850 493 / 9e-176 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.009G112307 [exp] 519 / 0 AT3G18850 493 / 1e-175 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.006G055000 [exp] 179 / 1e-52 AT3G57650 587 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.016G053000 [exp] 172 / 2e-49 AT3G57650 606 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.001G259200 [exp] 157 / 5e-44 AT1G51260 521 / 0.0 lysophosphatidyl acyltransferase 3 (.1) Potri.009G054500 [exp] 138 / 3e-37 AT3G57650 374 / 2e-128 lysophosphatidyl acyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018803 pacid=23178420 polypeptide=Lus10018803 locus=Lus10018803.g ID=Lus10018803.BGIv1.0 annot-version=v1.0 ATGGAGACAGTGGAGCCTTGCAAGCCAGTGAAAAGCAGTTATGGATTGAAACACCGTCCTCTAACTTCTCTTAGGCTAATAAGGGGATTGATATGTTTAG CGGTTTACCTTTCTACTGCCTTCACGTTTTTAGTCTACTTTGGCCCTATCGCAGCGGTCTTGCCCAGGCTTGTTAGCGTACACTATTCCAGAAAAGTGAC ATCCTTATTGTTTTCTCTTTGGTTAGCATTATGGCCTTTTTTGTTTGAAAAGATAAATGGGACCAAAGTTGTCTTTTCTGGGGATACCGTCCCGGCAAAA GAAAGAGTATTGGTTATAGCTAATCATAGGACTGAGGTTGATTGGATGTATTTGTGGAATCTTGCATTGCGGAAGGGATGCCTAGGCTCTATCAAGTATG TCTTAAAGAGCAGTTTGATGAAGCTACCAATATTTGGTTGGGGATTTCATATATTGGAGTTCATTTCGGTCGAGAGGAAATGGGAAGTTGATGAGCCTGT CATGCGAACAATGCTTTCAACTTTTAAGGATCCTCGAGATCCTTTGTGGCTTGCCCTTTTCCCCGAAGGAACAGATTTCACTGAAGAGAAGTGCAAGAAG AGTAAAAAATATGCTTCTGAAGTTGGGCTTCCCATTTTGACAAACGTGTTGCTTCCTAAAACCAAGGGTTTCTGTGTCTGCTTAGAAGTTCTGCAAGACT CCTTTGATGCAGTTTATGATTTGACAATTGCATACAAGCATCAATGTCCTACTTTCTTGGACAACGCGTTTGGTGTGGATCCTTCAGAAGTTCACATCCA TGTTCGGCGTATAACCATGAAAAACATCCCAGCCTCTGAAGATGAAGCTGCTGCTTGGTTAGTTGATACATTCAGACAGAAAGATGAGTTGCTTTCCGAT TTCAAAACCGAAGGCCATTTCCCTGACGAGGGACCGCAAAAAGAACTCTCTACTTTGAAATGCGCAGCAAATTTTGCAGTAGTGATGTCTTTGACTGCAA TATTTACCTATCTTACATTCTTTAGGTCCATCTGGTTCAAGGCTTATGTAAGTCTATCGTGTGCATATCTAGGTTCAGCTACGTATTTGAATTTTCGCCC AAACCCAATCATTGACTCTGTTAAGACATTGTTTACTTCCAATGAAACAACGAAATGA
AA sequence Show only first row Show all	>Lus10018803 pacid=23178420 polypeptide=Lus10018803 locus=Lus10018803.g ID=Lus10018803.BGIv1.0 annot-version=v1.0 METVEPCKPVKSSYGLKHRPLTSLRLIRGLICLAVYLSTAFTFLVYFGPIAAVLPRLVSVHYSRKVTSLLFSLWLALWPFLFEKINGTKVVFSGDTVPAK ERVLVIANHRTEVDWMYLWNLALRKGCLGSIKYVLKSSLMKLPIFGWGFHILEFISVERKWEVDEPVMRTMLSTFKDPRDPLWLALFPEGTDFTEEKCKK SKKYASEVGLPILTNVLLPKTKGFCVCLEVLQDSFDAVYDLTIAYKHQCPTFLDNAFGVDPSEVHIHVRRITMKNIPASEDEAAAWLVDTFRQKDELLSD FKTEGHFPDEGPQKELSTLKCAANFAVVMSLTAIFTYLTFFRSIWFKAYVSLSCAYLGSATYLNFRPNPIIDSVKTLFTSNETTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10018803 [exp]	0	1
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	2.8	0.8530
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	5.5	0.8255
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10028580 [exp]	8.8	0.7771
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	11.0	0.8302
AT5G61670			unknown protein		Lus10016713 [exp]	11.7	0.8216
AT1G11340			S-locus lectin protein kinase ...		Lus10013246 [exp]	18.3	0.7163
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	19.2	0.7713
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	19.7	0.8144
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	20.3	0.7761
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	20.9	0.7498

Compare expression of checked genes

Lus10018803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.