Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75030 171 / 4e-49 ATLP-3 thaumatin-like protein 3 (.1) AT1G75050 171 / 5e-49 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 154 / 8e-43 PR-5, PR5 pathogenesis-related gene 5 (.1) AT2G17860 147 / 2e-40 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 145 / 1e-39 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 145 / 2e-38 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 142 / 6e-38 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36000 139 / 1e-37 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 139 / 7e-37 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G18250 137 / 1e-36 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015932 [exp] 441 / 8e-152 AT2G05642 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Lus10017778 [exp] 386 / 3e-128 AT5G08020 75 / 3e-14 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10013561 [exp] 149 / 4e-40 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 147 / 3e-39 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10041901 [exp] 145 / 8e-39 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 144 / 1e-38 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10033136 [exp] 143 / 7e-38 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 143 / 9e-38 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041899 [exp] 143 / 1e-37 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040700 [exp] 193 / 3e-57 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.002G020500 [exp] 150 / 1e-40 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 149 / 7e-40 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.005G240900 [exp] 146 / 3e-39 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 145 / 6e-39 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G221100 [exp] 143 / 9e-39 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 143 / 1e-38 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221800 [exp] 142 / 2e-38 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020400 [exp] 144 / 3e-38 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G284305 [exp] 142 / 3e-38 AT1G75800 270 / 3e-90 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018804 pacid=23178423 polypeptide=Lus10018804 locus=Lus10018804.g ID=Lus10018804.BGIv1.0 annot-version=v1.0 ATGCATAATTTCTCACACCTCCTGACTGATCAGAAGGTGTATACTGTCAAGAAGGTGTATATTGTCACTAATGCTAAAGTCATCAATGCGCCGAAGAAAT TCCGTCCAATTCCAAATCGGTTCGCCATTGAATTCACTCCTACCACTGTAGTAGAGGTCATAGAAGATATACCATCTATTCCCCGATACAAATTTTCGTT CCTGAAGGCAGGCAAAATTCTGTCGGACTTGCACAAACCCGAGCTACTTACAGATGTTATAGGATATGTGACAGAATATAAGACTCCTCAAAATGCACCA GCATATTCAGCAAGGGGAGAAACCACACTCCAAATGGCCAAGGAAAATGATGACAAACTAGATGCTATTTTACCAGTTTACTCATATCCAAGTGACATCG GAAACAGTGATTCGGTAACCTTGGAAACGTTGAATTCAGCAATATTGGAGGTAGAGAACCAGGAGAAGTATTTTATTGTGGATTGTATGGTAAAAAGCAT TAAAGATACATGGTGTTATACTGGATGTGAAGTTTGTTCCAAGAAAGTTGAAGATGATGTCTCTGATTACTTCTGTTGTAAACTACTTAGGAAGGATGCA ACGAAACGATTTCGTGTTCAAATCGAAGTTGCAGACAGTACAGGCGAGGCAGACCTCATTCTTCTTGACTGTTTTGGTCAAGAACTTCTTAGGACAACAA CCAACAGGCTATATGAACTGAACGGTAAAGACAGTAGAATTCCACCTGATCAGATAACAATTTTTGTTGGCAACAACATAAAAGCACAAGTTCAGGTAAA CGCGTACAATATACGAACGGCGAGAAATGAATTTACAATCACCAAGATTCTAGCATCACCAATTGTTCAGACTCCTTCGACTCCCCAGGAAAAGGTTCCA GCTTTTGGTACAGGAGATGATTCAAATCAGCAGTCCATTAAGAGTTGGATTTCTGGACAATCATCGATTGAGAAATCTGCTGAAGTTGCAGCAAGTTCTA CCAAGAACAACGAAGTAGCTGCTATAAATTTGGAAGAAGCTCTTGAAGACGACCTTCTGGATGAAAATGATCCCTCTGTTTCATTGGATTTGTGGATGTT AGTTTCTTTACTGTCACATTTCCTGCATTTCAGAGGTTACAAAAACCAGTTTGAACTTCTGAAAACCTATCTGACTACATTAACTACATTGATGACGCCA CCGTCTTCACCCTCCTCAACCAGTGCACTTTCACCATCTGGCCAGGAACCCTCTCCGGAAACGGAGCTGCCCTCCTCGGTGACGGTGCCTTCCAACTATC CCCAAACGCATCCGCGCAATTCCCTGCCCCGCCCGGCTGGTCTGGCCGATTCTGGACCCGAACCGGCTGCTCCTTCGACGCCTCAGGCAACGGAAAATGC CAGACTGCGGCGGCACACTCAAGTGCTCCGGCGGCGGATCCCATCCGGTTTCCCTGGCCGCGTTCACCATCGCTGCTGGCCCGGGGAAAAGGACTTCTAT GACGTCAGCCTGGTCGACGGGTACAACGTCGGCGTCGGGGTGAAGCCTATCGGCAGCGGCGCGTCGGTTGACTGCAGGTACGGAGGTTGCGTTACGGATC TGAACGCTGGTTGCCCGCCGGAGCTCCGGATCGTGGATTCAGTTGGGGCTGTGGTGGCTTGCAAAAGCGCGTGCGAGGCATTTAACTCGCCGGAGTTCTG CTGCACTGGAGACCACGGGACGCTGCAGACTTGCGCGCCGTCGCAGTATTCGGTGATGTTTAAGAATGCCTGTTTGACGGCCTACAGTTATGCTTATGAT GATGCTTCAAATACTTTCACTTGTTCCGGAACCGACTATTTTATCACTTTCTACCCCAACGGGTCCTGA
AA sequence Show only first row Show all	>Lus10018804 pacid=23178423 polypeptide=Lus10018804 locus=Lus10018804.g ID=Lus10018804.BGIv1.0 annot-version=v1.0 MHNFSHLLTDQKVYTVKKVYIVTNAKVINAPKKFRPIPNRFAIEFTPTTVVEVIEDIPSIPRYKFSFLKAGKILSDLHKPELLTDVIGYVTEYKTPQNAP AYSARGETTLQMAKENDDKLDAILPVYSYPSDIGNSDSVTLETLNSAILEVENQEKYFIVDCMVKSIKDTWCYTGCEVCSKKVEDDVSDYFCCKLLRKDA TKRFRVQIEVADSTGEADLILLDCFGQELLRTTTNRLYELNGKDSRIPPDQITIFVGNNIKAQVQVNAYNIRTARNEFTITKILASPIVQTPSTPQEKVP AFGTGDDSNQQSIKSWISGQSSIEKSAEVAASSTKNNEVAAINLEEALEDDLLDENDPSVSLDLWMLVSLLSHFLHFRGYKNQFELLKTYLTTLTTLMTP PSSPSSTSALSPSGQEPSPETELPSSVTVPSNYPQTHPRNSLPRPAGLADSGPEPAAPSTPQATENARLRRHTQVLRRRIPSGFPGRVHHRCWPGEKDFY DVSLVDGYNVGVGVKPIGSGASVDCRYGGCVTDLNAGCPPELRIVDSVGAVVACKSACEAFNSPEFCCTGDHGTLQTCAPSQYSVMFKNACLTAYSYAYD DASNTFTCSGTDYFITFYPNGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75050			Pathogenesis-related thaumatin...		Lus10018804 [exp]	0	1
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	5.1	0.9363
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	9.1	0.9227
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	11.6	0.9211
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	12.3	0.9200
					Lus10007415 [exp]	21.6	0.9082
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	23.4	0.8919
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	28.4	0.8942
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	30.7	0.8860
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	31.6	0.8915
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	33.4	0.8866

Compare expression of checked genes

Lus10018804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.