Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75060 262 / 1e-87 unknown protein AT1G19330 241 / 2e-79 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032725 [exp] 354 / 5e-124 AT1G75060 286 / 1e-98 unknown protein Lus10028777 [exp] 160 / 9e-48 AT1G75060 179 / 2e-56 unknown protein Lus10017506 [exp] 159 / 2e-47 AT1G75060 178 / 6e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133500 [exp] 301 / 5e-103 AT1G75060 312 / 2e-108 unknown protein Potri.014G041200 [exp] 290 / 6e-99 AT1G75060 317 / 3e-110 unknown protein Potri.001G101600 [exp] 155 / 4e-46 AT1G75060 178 / 7e-56 unknown protein Potri.003G130100 [exp] 150 / 2e-44 AT1G75060 178 / 8e-56 unknown protein Potri.005G088101 [exp] 51 / 1e-08 AT1G19330 55 / 9e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018805 pacid=23178426 polypeptide=Lus10018805 locus=Lus10018805.g ID=Lus10018805.BGIv1.0 annot-version=v1.0 ATGCTGGAGACGATGGAGAGTTCTGTGACCGGAGGTGGAGGAGGGTTCTCTCACTTTCAAAGCTGCGGCGGAGATAGTAGCGAGGAGGAGCTCTCCGTAC TGCCACGTCATACCAAGGTGGTCGTCACCGGCAATAACAGGACCAAGTCGGTGCTGGTCGGACTTGAAGGAGTAGTTAAGAAGGCTGTAGGTCTCGGCGG TTGGCATTGGCTGGTTCTTACGAATGGGATAGAAGTGAAGCTACAGAGAAATGCCCTGAGTGTAATCGAGGCACCAACTGGGAATGAGGATGACGATGAT CTGGAATTCGAGACTGCAAAGTGGAATGTCTCAGATATGGCGTCTGATGATACCCAAAAGTCCCACAGATCATCAAGGCATCGGATACATAAGTCATCGG GATCATCACACAAGTCCATGAGTAGATCATCTCTCTCGTGTGACTCACACTCTTATAAGAGTTCTGTTTCTACCCCTCGTGGGTCGACGAAGGTTGACCT GAGCAAACTGGAGATGGCTGCACTATGGAGATATTGGCGACACTTCAACCTGATGGATGCTTTCCCTAATCCGTCAAAGGAGCAGCTGATTGAAGTGGTG CAGAGGCATTTCATGACACAGGTTATTAGTATGTTTGGAATCTTTACCGTGCAAGGTCTGCTTTCTGAGATACTGCTTCCATCAGAGGCTTTTGGGTTTG GAGACGTTACTTCATCTGAGACCTACAATATTGGGGTGATGATTATGAAGGCAATATATTGTGTGTGGGATGGGCAGATCATGATTAGTTATAACATGAA GACTGTAAGAAACACCATTCGACGAATTACTACTCCTGAAGTTAATGGTACAAATTACTTTCGAATGGCTACTCATGATAAGATTGATGTTTGGCCTGGC CTCTATCCATGA
AA sequence Show only first row Show all	>Lus10018805 pacid=23178426 polypeptide=Lus10018805 locus=Lus10018805.g ID=Lus10018805.BGIv1.0 annot-version=v1.0 MLETMESSVTGGGGGFSHFQSCGGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLEGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDD LEFETAKWNVSDMASDDTQKSHRSSRHRIHKSSGSSHKSMSRSSLSCDSHSYKSSVSTPRGSTKVDLSKLEMAALWRYWRHFNLMDAFPNPSKEQLIEVV QRHFMTQVISMFGIFTVQGLLSEILLPSEAFGFGDVTSSETYNIGVMIMKAIYCVWDGQIMISYNMKTVRNTIRRITTPEVNGTNYFRMATHDKIDVWPG LYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75060			unknown protein		Lus10018805 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	1.7	0.8661
AT2G25220			Protein kinase superfamily pro...		Lus10005345 [exp]	2.4	0.8522
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	2.4	0.8601
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	6.5	0.7978
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	12.6	0.8010
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	12.8	0.8144
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	13.9	0.7801
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10007893 [exp]	19.7	0.7420
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	21.3	0.7920
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	27.1	0.7603

Compare expression of checked genes

Lus10018805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.