Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18880 57 / 1e-10 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT3G24255 56 / 3e-10 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2) AT1G33710 51 / 2e-08 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT4G04650 50 / 4e-08 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT1G43730 49 / 8e-08 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT2G02520 47 / 6e-07 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT5G16486 45 / 2e-06 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT1G60720 44 / 6e-06 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040060 [exp] 76 / 2e-18 AT5G18880 40 / 1e-04 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) Lus10008147 [exp] 74 / 5e-18 AT4G04650 58 / 8e-11 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) Lus10026142 [exp] 71 / 3e-15 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10008685 [exp] 66 / 2e-13 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10001530 [exp] 0 / 1 AT5G23110 5981 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000101 [exp] 38 / 0.0006 AT3G24255 193 / 1e-53 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018808 pacid=23178443 polypeptide=Lus10018808 locus=Lus10018808.g ID=Lus10018808.BGIv1.0 annot-version=v1.0 ATGCCTCGTTTCTCTATCTCTCATGTTTGGAATGATACTCGAAATCACACTCCTATAGTTATGTGGTGTGACTTAATCTGGAAGGGACCTTCTATTCTGA AGCATACCTTTATCAATTCGCTTGTAATTAGGGGGAGGCTGGTTACAAATGGCTCTATGGCTGCTTGGGGATTGCACTGGGATATCTCATGCCTCTTGTG TGATAATGGCCTGGATGACATTGATAATTTATTCATGGGTTGTCCTTACATTGATGCTATCCTTACCTATTTTGATGTTCACCTCGTTACTAATGGAGAT AGACAGAAGGAGGTGGAAATTGCTGGAAGTAGATTTGTAGGTGCCACTGGTGCTGCGCAGTGA
AA sequence Show only first row Show all	>Lus10018808 pacid=23178443 polypeptide=Lus10018808 locus=Lus10018808.g ID=Lus10018808.BGIv1.0 annot-version=v1.0 MPRFSISHVWNDTRNHTPIVMWCDLIWKGPSILKHTFINSLVIRGRLVTNGSMAAWGLHWDISCLLCDNGLDDIDNLFMGCPYIDAILTYFDVHLVTNGD RQKEVEIAGSRFVGATGAAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18880			RNA-directed DNA polymerase (r...		Lus10018808 [exp]	0	1
					Lus10000325 [exp]	2.8	1.0000
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10004735 [exp]	4.9	1.0000
					Lus10002099 [exp]	5.5	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	7.7	1.0000
					Lus10025316 [exp]	8.1	1.0000
					Lus10011594 [exp]	8.7	1.0000
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	8.8	1.0000
					Lus10032121 [exp]	9.4	1.0000
AT5G39200			unknown protein		Lus10030710 [exp]	9.4	1.0000
AT4G20800			FAD-binding Berberine family p...		Lus10006507 [exp]	10.2	1.0000

Compare expression of checked genes

Lus10018808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.