Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33480 63 / 5e-11 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT5G04410 62 / 2e-10 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G17730 59 / 6e-10 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G10480 60 / 1e-09 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10500 60 / 1e-09 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G10490 58 / 2e-09 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G39610 58 / 3e-09 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT4G27410 58 / 3e-09 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G65910 59 / 4e-09 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G29035 57 / 8e-09 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032724 [exp] 535 / 0 AT5G04410 66 / 4e-12 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10042284 [exp] 62 / 2e-10 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 62 / 2e-10 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10001809 [exp] 58 / 2e-09 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10002581 [exp] 57 / 4e-09 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10027357 [exp] 58 / 7e-09 AT3G04070 172 / 3e-50 NAC domain containing protein 47 (.1.2) Lus10032919 [exp] 58 / 7e-09 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10028824 [exp] 57 / 1e-08 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10015587 [exp] 57 / 2e-08 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041300 [exp] 256 / 9e-82 AT1G65910 75 / 2e-14 NAC domain containing protein 28 (.1) Potri.009G052300 [exp] 65 / 2e-11 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.009G052200 [exp] 62 / 2e-10 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.001G061200 [exp] 60 / 6e-10 AT5G13180 310 / 6e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.012G007500 [exp] 60 / 1e-09 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.010G174600 [exp] 59 / 1e-09 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.015G004100 [exp] 59 / 2e-09 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.008G031800 [exp] 59 / 2e-09 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.008G081500 [exp] 57 / 1e-08 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G229900 [exp] 57 / 2e-08 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10018810 pacid=23178440 polypeptide=Lus10018810 locus=Lus10018810.g ID=Lus10018810.BGIv1.0 annot-version=v1.0 ATGTGTCCTCCTGCACTAATTCCTATTGCTGATATCGGTTTTGATGGTACGCCGGAGGAGATTTGCAAGTCTCTGCACAAAGTGATGAGGGGATCTCCGC TCCCCAGCAATGTTGTTGATGACATTTGTCCTTACGTGCACGCTCCATCGAATCTACCTTCTGATATCTGGTACTTGATCAGTAAATCGGCAGAGAACAA GGACACAGGAAAGGGGTTCTGGAAATTGAAGGGGGAGTCATTGGAACTCTTCACAGACTCTGTGATCACTGGTTGGAGATCTACCTTTGAGTACTATGAA GGCAAAGAGCCGAAAGTTAAGACCAATTGGTTAATGCAGCAGTATTGGGTAACTGAGAAGGATGTCTGTGAAAGCAGCAAGGCAAAGGAATCCAGCAGCC TATGCAGAGTCTTCCTTGAACGAGATCATGTAGAGGACAAGAGGAATTGCGTGGCAACTCCTCTTGTTTCAGATGAAGGTGTAGCTCTGAGGCGACTAAT TACCTCCAGTGTTTGTAGTAGTGCCTCCACAAGCAAGGCTGAGGGAGATAGCATAGCTGTCGCTGATGTATGGGCTAATTTACTGGATGAATGTTTTGCT GGAGGAGACTATTTGGAAATGCTTGATCTGGCTGTTCCAGCATCAAGTTCTTCAGGCACAGATAATTCAAGTTGTATGAGCATATCATCAGATGAGTATT TTGATTCTTGGGCTTTGCTACGTGAAATAGAATCTGATAGTATTCAAGATTCTGTGCAAAAGACTGGTGAGTGCAAGCTGAATGTTTCCACCACTTGCAA GCCTGAAGAATTGATAATGAATCCAGGTTCTTCAGTGTCAATTGTCAGCACTCGAGAAACCGAGGGACCATCTGAACAGGTAGCCAGGACTGGCCCATCA TTGTGTGATATATCCGAGCAACATAAATATATAAATGATAAGGCTAAGCAGAAGCAGAAGCAGCAACAGCAGCAAGCGTCAAGAAAGCATAAACTGGCTG ACAAGGACAAGGGCTCGTCGTCGGATTCTTCTCATGGAGGTTCCTCGTCTGGTGCGTCTAGAGATGTGGAGAAAAAGGGTTCAAAGGGTATACTGAAGAA ACGAAAGAATAAGTACTTATGCTTCATGCCATTTAACTTCGTCTTCTGA
AA sequence Show only first row Show all	>Lus10018810 pacid=23178440 polypeptide=Lus10018810 locus=Lus10018810.g ID=Lus10018810.BGIv1.0 annot-version=v1.0 MCPPALIPIADIGFDGTPEEICKSLHKVMRGSPLPSNVVDDICPYVHAPSNLPSDIWYLISKSAENKDTGKGFWKLKGESLELFTDSVITGWRSTFEYYE GKEPKVKTNWLMQQYWVTEKDVCESSKAKESSSLCRVFLERDHVEDKRNCVATPLVSDEGVALRRLITSSVCSSASTSKAEGDSIAVADVWANLLDECFA GGDYLEMLDLAVPASSSSGTDNSSCMSISSDEYFDSWALLREIESDSIQDSVQKTGECKLNVSTTCKPEELIMNPGSSVSIVSTRETEGPSEQVARTGPS LCDISEQHKYINDKAKQKQKQQQQQASRKHKLADKDKGSSSDSSHGGSSSGASRDVEKKGSKGILKKRKNKYLCFMPFNFVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	0	1
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	2.6	0.9202
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	4.0	0.9191
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	4.2	0.9124
AT2G46080			unknown protein		Lus10005122 [exp]	4.5	0.9096
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	4.9	0.8937
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	5.5	0.8973
AT5G57910			unknown protein		Lus10036591 [exp]	7.3	0.8603
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	8.4	0.8928
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	10.6	0.8727
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	12.4	0.8473

Compare expression of checked genes

Lus10018810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.