Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75100 182 / 4e-50 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT4G12770 144 / 2e-36 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 141 / 3e-35 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36520 140 / 6e-35 Chaperone DnaJ-domain superfamily protein (.1) AT1G21660 133 / 3e-33 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 133 / 2e-32 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G30280 113 / 9e-27 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032709 [exp] 765 / 0 AT1G75100 166 / 7e-44 J-domain protein required for chloroplast accumulation response 1 (.1) Lus10012303 [exp] 139 / 1e-34 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10041769 [exp] 139 / 2e-34 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10016079 [exp] 137 / 5e-34 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10018854 [exp] 128 / 4e-31 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10028548 [exp] 127 / 6e-31 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10012302 [exp] 127 / 1e-30 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 125 / 1e-29 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10024270 [exp] 112 / 2e-25 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134300 [exp] 218 / 2e-62 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.014G042600 [exp] 215 / 1e-61 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.014G197600 [exp] 144 / 3e-36 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.007G022600 [exp] 140 / 7e-35 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G217200 [exp] 139 / 1e-34 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G120700 [exp] 138 / 3e-34 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G079200 [exp] 133 / 3e-33 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 128 / 1e-31 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G081500 [exp] 122 / 2e-29 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 119 / 7e-28 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018811 pacid=23178437 polypeptide=Lus10018811 locus=Lus10018811.g ID=Lus10018811.BGIv1.0 annot-version=v1.0 ATGTTGGCGACGAGCCCCTGCCGAGTCTCCAACTCCGACATCGATTTCAACGACGTTTTTGGCGGCCCGCCGCGGAGAGCGTCCTTACAGAACGCGCGGC ACAGTTTTGGGGAGGATCCGTTCGGAGGCAACGAGGACATGACGCCGTCTTCGTCGAGGAATCGATGGTCTGGGTTATACGAGAAGCCCGTTTTTGGTGA GCACGAAGGAGGGACCAGCAACAGAGGACGGCGTCAGGCCGGAGATTTCTTCGACGACATATTTGGCGGGAACGATTCTTTGGGTCCTTCTTCTCCCAGG CGGATTATCAGCGGTTCTCCTGCCAGCTCCAGAGTTTTGAGTCCGGCCAGAGTTGATCCGCCAGCAAGTTCTTCACTTCCTGCTCCGTTCAGTTTACCTT CCAAGCTAACCAAAGGGAGTGATCTGCCGACATTTGGTTCGAGTCCTCGCAACTATTCGTTTTCTCCATTGTCGAGATCCTCGAGCAAACAAGATTTGGT CGAAACCGAAAGGGACGAGTTGTCCCAAAACATGGCTAAGCACCATCATCCGGATGTATCGTTTCAGAATCTGAAAGGAGGAGATTCTACGAGTTCCTCA CAAGTATTTGGAAGCAATGACGGCCATTTCCACTTCTCTATCTACAAATGGGCGAGCCAAGGAGCTCCTCCTCCTATGTCTACGCCTCTCAGGGGAGGTT TGAGATCGAGAGATAAGTTCACATCATCATCAGCAAGTGAAGTTTCTGTTGAACCAGAGATCAGTGTTGAACAACTTAAACAACCTGATCCTCACCAGCG TTCTAGACTCGTTTCTGAGCCAAGTACAAAGGGAACTGGTGAGAGAGCAAGAGAAAAGGAGTTGAGAGAGATCAAACTTAAGACCTCCAACAAGGCTGAA AAACATGCAGAGTTTGAGGAAACCCAGAGGAAGAGTAAAGCGAAGGTGAAGGATTTTGTGAATATATTCAACCAGGAGGCCAAACCTGATGTCAAAGATC AAAGGCAAAGAAGCAAGTCGGGGAAGAAGGATAGGACAAATTCCAGAGCAGTGGATGGCACTAAATTGGTTGATCAGAAGACCAAGTTGGCTCGTGAGAA GAGCGACTCTAATCTGGAGGCATCATGTGTCCAGGTTGAAAAGATTGAGAAACAACCAGCTGAGGAGAGAAGTGAGAGTCACCGAACTTCTGCAGCTCCG GATACATCAGTAGCAGTCTCACCAGCAGAAGAAGCAACACTTGGAGATCAAGATGAACCCTTCCAGGTCAGAGAATTACCACAACAGACAGAAGACGAGA CGCAATTACCCACTGGCGACAATAATGAACAACTCCAGGCGAATGATGTCAAGATAAGGAAATGGTGCCAAGGGAAGGAAGGAAACATACGTTCCCTGCT CTCAACACTGCAATATATTCTATGGGCGGGAAGTGGGTGGAAGCCAGTGCCTTTAGTGGATATAATAGAAGGGAGTGCAGTTAAAAGAACATATCAAAGA GCCTTACTTTGTCTACACCCAGACAAGCTGCAACAGAAGGGTGCTACCGGAGAACAGAAATTCATCGCTGAAAAAGTTTTCGATATCTTGCAGGAAGCAT GGATACACTTCAATTCACTTGGTTCTGTGGTTTGA
AA sequence Show only first row Show all	>Lus10018811 pacid=23178437 polypeptide=Lus10018811 locus=Lus10018811.g ID=Lus10018811.BGIv1.0 annot-version=v1.0 MLATSPCRVSNSDIDFNDVFGGPPRRASLQNARHSFGEDPFGGNEDMTPSSSRNRWSGLYEKPVFGEHEGGTSNRGRRQAGDFFDDIFGGNDSLGPSSPR RIISGSPASSRVLSPARVDPPASSSLPAPFSLPSKLTKGSDLPTFGSSPRNYSFSPLSRSSSKQDLVETERDELSQNMAKHHHPDVSFQNLKGGDSTSSS QVFGSNDGHFHFSIYKWASQGAPPPMSTPLRGGLRSRDKFTSSSASEVSVEPEISVEQLKQPDPHQRSRLVSEPSTKGTGERAREKELREIKLKTSNKAE KHAEFEETQRKSKAKVKDFVNIFNQEAKPDVKDQRQRSKSGKKDRTNSRAVDGTKLVDQKTKLAREKSDSNLEASCVQVEKIEKQPAEERSESHRTSAAP DTSVAVSPAEEATLGDQDEPFQVRELPQQTEDETQLPTGDNNEQLQANDVKIRKWCQGKEGNIRSLLSTLQYILWAGSGWKPVPLVDIIEGSAVKRTYQR ALLCLHPDKLQQKGATGEQKFIAEKVFDILQEAWIHFNSLGSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	0	1
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10042410 [exp]	2.0	0.8699
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	2.2	0.8860
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	2.4	0.8853
AT3G56010			unknown protein		Lus10040939 [exp]	3.9	0.8798
AT5G59400			unknown protein		Lus10016531 [exp]	4.9	0.8648
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10026572 [exp]	5.5	0.8401
AT2G23390			unknown protein		Lus10010689 [exp]	6.9	0.8503
AT5G61040			unknown protein		Lus10021155 [exp]	9.2	0.8567
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	9.9	0.8405
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	11.0	0.8391

Compare expression of checked genes

Lus10018811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.