Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19360 594 / 0 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75110 575 / 0 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 496 / 1e-175 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 66 / 2e-11 XEG113 xyloglucanase 113 (.1) AT1G70630 66 / 3e-11 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01750 54 / 6e-08 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT4G01770 53 / 2e-07 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT4G01220 51 / 9e-07 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G19970 47 / 2e-05 unknown protein AT1G56550 45 / 8e-05 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032710 [exp] 793 / 0 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10026327 [exp] 589 / 0 AT1G19360 610 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10042340 [exp] 584 / 0 AT1G19360 603 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 66 / 1e-11 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 61 / 1e-09 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10027804 [exp] 57 / 2e-08 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10005034 [exp] 53 / 3e-07 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10041973 [exp] 50 / 1e-06 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 50 / 2e-06 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134400 [exp] 674 / 0 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 668 / 0 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.009G113300 [exp] 610 / 0 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 57 / 2e-08 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 55 / 5e-08 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.002G166000 [exp] 53 / 2e-07 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.014G092400 [exp] 47 / 1e-05 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.010G099400 [exp] 44 / 0.0002 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G051600 [exp] 42 / 0.0005 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.008G142200 [exp] 42 / 0.0007 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10018812 pacid=23178424 polypeptide=Lus10018812 locus=Lus10018812.g ID=Lus10018812.BGIv1.0 annot-version=v1.0 ATGGCGGGGCGTAGAGACAAACACCCTACGTTTCGCCGATCTCCCCTTCTCGTAGCCATCGTCGTTGGAATTCTTCTCGGTTGCCTTTTCGCCCTCTTGT ATCCTCATGGCTTTTTCACCTACGATCCGGCTTTTCATCAGATTGATAAGTCAGATCTCCAGGTTGGCTCATCATGTGAATCACCAGAAAGGATTAGGAT GCTTAAATCAGATATTGTCTCCCTTACGGAGAGCAATGCACAGTTGAAGAAGCAAGCCAGGGAGCTAAATCAAAAGCTGCAAATGGCTGACCAGGAAAAA GACCATGCACAGAAGCAGGTATTGCTGTTAGGTAAACAGCAGAAAGCTGGGCCTTTTGGTACTGTCAAGGGTTTGAGAACCAACCCAACTGTCGTTCCTG ATCAATCTGTTAATCCAAGGCTTGCAAAACTGTTGGGGGAAATTGCTCTTGGGAAGGAGGTCATCGTTGCTCTTGCAAACTCGAATGTACAAGAATCATT AGAGGTTTGGTTCACTAACATTAAAAGGGTCGGTATTAAAAATTACGTGGTTGTAGCCTTAGATGATCACATTGCAGATTTCTGCAAGTCCAATGATGTT CCAGTGTATACGAGAGCTCCAGATGATGGTGTCGATTCAGTAGCGAAAACGGGAGGCAACCACGCTGTATCTGGGTTAAAGTTCCGCGTTTTGAGGGAGT TTCTGCAGCTGGGATACAGCGTCCTCCTCTCAGATATTGACATTGTATATCTACAGAACCCATTTCATCATTTGTATAGAGATTCTGATGTCGAATCCAT GACTGATGGCCACAATAACATGACAGCCTACGGTTTCAACGATGTATTTGATGAACCAGCCATGGGATGGGCTCGTTATGCACACACAATGAGGATATGG GTTTATAACTCTGGCTTCTTTTACATAAGACCAACGCTCCCTGCAATTGAGCTTTTGGATCGTGTGGCTGGTAGACTATCAAGAGAGCCAAACTCATGGG ATCAAGCAGTTTTCAATGAGGAACTTTCCTACCCATCCCACCCTGGGTATGAAGGTCTTCATGCTGCAAGAAGAACCATGGATTACTATCTATTTATGAA CAGTAAGGTACTTTTCAAGACTGTCAGGAAAGATGCTAACCTAAAGAAGCTGAAGCCAGTGATTGTTCACCTAAATTATCACCCAGACAAGCTACCAAGA ATGAAAGCTGTGGTCGAGTACTACGTCAATGGCAAGCAGGATGCGCTCGATCCCTTCCCCGATGGTTCTGACTGGTAG
AA sequence Show only first row Show all	>Lus10018812 pacid=23178424 polypeptide=Lus10018812 locus=Lus10018812.g ID=Lus10018812.BGIv1.0 annot-version=v1.0 MAGRRDKHPTFRRSPLLVAIVVGILLGCLFALLYPHGFFTYDPAFHQIDKSDLQVGSSCESPERIRMLKSDIVSLTESNAQLKKQARELNQKLQMADQEK DHAQKQVLLLGKQQKAGPFGTVKGLRTNPTVVPDQSVNPRLAKLLGEIALGKEVIVALANSNVQESLEVWFTNIKRVGIKNYVVVALDDHIADFCKSNDV PVYTRAPDDGVDSVAKTGGNHAVSGLKFRVLREFLQLGYSVLLSDIDIVYLQNPFHHLYRDSDVESMTDGHNNMTAYGFNDVFDEPAMGWARYAHTMRIW VYNSGFFYIRPTLPAIELLDRVAGRLSREPNSWDQAVFNEELSYPSHPGYEGLHAARRTMDYYLFMNSKVLFKTVRKDANLKKLKPVIVHLNYHPDKLPR MKAVVEYYVNGKQDALDPFPDGSDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	0	1
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	1.0	0.9584
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	2.4	0.8801
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	3.7	0.8778
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	4.5	0.9078
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	5.7	0.8815
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	6.0	0.8945
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	8.9	0.8566
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	10.6	0.8745
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	14.5	0.8723
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10001544 [exp]	19.0	0.8569

Compare expression of checked genes

Lus10018812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.