Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006097 [exp] 52 / 4e-08 AT4G29090 43 / 8e-05 Ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018814 pacid=23178432 polypeptide=Lus10018814 locus=Lus10018814.g ID=Lus10018814.BGIv1.0 annot-version=v1.0 ATGGTGCACGTTTTGCTTTTGCTTCAATCGCTCTGGTCCCCCGACCAATTCCACTTCAACAAGCAACGCTTTCCCGACATCGCTCGACGACTTTGGAGTT TCAACGTGCATGTAGCAGTTCGGGAAAGGCTCTGTTTTTTTGCTATGGGTGTTGTCGTCCATCGAGCATCTAGGCCAGCTATCTCCATCACCATACTAGT AATTCATGACCATCGTCTTGCTCTTCCAGTAGCAGGATCTCTTCCTCACGACACAATCTCTATCCTCTCATACTCGATTGAAGGTTTTCGTCTCCTCAAT TGCTCAACTGGTGACATCTGCATAGGACAACTTCTTCAAGAATTTCGCTCCATCCTCTCCACTATGTTATCAGGTACTGTTAGTCAAGTCTTTCTTATGG ATAATTGTGTCGCTCATCTAATGGCAGAAGGCTTCTCCCAAGCCTTGGTGATCCCGTCGCTCGATGAAGGAAGAAGGAGGCCAAGCCGGCGGAGCGGTCG CCCGATTCGTTGGCGACTTCCGATTCCGCGAGAACAAACGAAGGAGGAGCATATGAGAATGAGGTTGGGGTCAGGGATCGAGAGAGATTATCATTGGGGC GTCAGAGTGCGTATGACGGAAGACAGAGGCAATGGTGGTCAATTTTCGCGATTCCAAGGAAGTGGGAGGCTCGCCGGAAAACTGGGCAGCCTCGCCGGCG GCAAGGGTCTCGCTGGAGAAGTAGACTGA
AA sequence Show only first row Show all	>Lus10018814 pacid=23178432 polypeptide=Lus10018814 locus=Lus10018814.g ID=Lus10018814.BGIv1.0 annot-version=v1.0 MVHVLLLLQSLWSPDQFHFNKQRFPDIARRLWSFNVHVAVRERLCFFAMGVVVHRASRPAISITILVIHDHRLALPVAGSLPHDTISILSYSIEGFRLLN CSTGDICIGQLLQEFRSILSTMLSGTVSQVFLMDNCVAHLMAEGFSQALVIPSLDEGRRRPSRRSGRPIRWRLPIPREQTKEEHMRMRLGSGIERDYHWG VRVRMTEDRGNGGQFSRFQGSGRLAGKLGSLAGGKGLAGEVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018814 [exp]	0	1
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	4.7	0.8617
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	5.5	0.8653
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10037551 [exp]	6.3	0.8437
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	8.5	0.8461
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	9.0	0.8589
AT5G07670			RNI-like superfamily protein (...		Lus10027217 [exp]	9.5	0.8308
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	12.0	0.8222
AT4G00525			unknown protein		Lus10030386 [exp]	12.5	0.8143
AT1G08390			unknown protein		Lus10038152 [exp]	12.6	0.7838
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	14.1	0.8217

Compare expression of checked genes

Lus10018814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.