Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01270 334 / 3e-108 RING/U-box superfamily protein (.1) AT4G01245 63 / 6e-12 unknown protein AT5G41440 44 / 4e-05 RING/U-box superfamily protein (.1) AT1G32361 44 / 0.0001 ATL1F RING/U-box superfamily protein (.1) AT4G11360 43 / 0.0001 RHA1B RING-H2 finger A1B (.1) AT3G58720 44 / 0.0002 RING/U-box superfamily protein (.1.2) AT4G11370 42 / 0.0003 RHA1A RING-H2 finger A1A (.1) AT4G12210 42 / 0.0005 RING/U-box superfamily protein (.1) AT2G20030 43 / 0.0006 RING/U-box superfamily protein (.1) AT1G18770 39 / 0.0009 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005127 [exp] 1031 / 0 AT4G01270 352 / 1e-115 RING/U-box superfamily protein (.1) Lus10005126 [exp] 719 / 0 AT4G01270 179 / 1e-51 RING/U-box superfamily protein (.1) Lus10016541 [exp] 41 / 0.0008 AT5G57750 68 / 2e-14 RING/U-box superfamily protein (.1) Lus10015506 [exp] 40 / 0.001 AT2G18670 102 / 2e-28 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089800 [exp] 502 / 3e-173 AT4G01270 381 / 8e-127 RING/U-box superfamily protein (.1) Potri.002G164000 [exp] 157 / 3e-43 AT4G01270 121 / 2e-30 RING/U-box superfamily protein (.1) Potri.010G245801 [exp] 44 / 8e-05 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 42 / 0.0002 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.014G170400 [exp] 42 / 0.0003 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.001G400600 [exp] 42 / 0.0003 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.016G067900 [exp] 42 / 0.0003 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 42 / 0.0007 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10018817 pacid=23144738 polypeptide=Lus10018817 locus=Lus10018817.g ID=Lus10018817.BGIv1.0 annot-version=v1.0 ATGAGTAATTCCTTCACCAAAACAATCTGCTCAATCTGCTACGAAGATCTCAAGCCAATCGTCGAGGATCTTCAAGTAATCTCCATCTGTGGCCATGTCT TACACGAACTTTGCTTGCAGCAATGGTTCGAATACTGTCCCGGAAAAAAGAAGTATAGCTGTCCCGTTTGCAAGCAGAGATGCCAAGTCTCCGATGTGGC CCGGCTGTATTTCCAGTCACTGGGGGATTCCGCTGTGTCACAGTGCCAGGAGAAGGTGTTAGATCCGGAGTTGCTTGATGGAGAGATTAGGAGATTGGAG GGGAAAGTGTCAGGGCTCACTTCCACTGTAGATATTCAGGACAAGGAAATTAAGCGGCTTAATGGAGAGGTTCACTTGTTCGGATTCTTGTTCCAGTTGT ATGATTGCAAGGAACAGTTGAAGGCTGAACTTGTCTTGAAGAATGAAGTGGTGCAGCAGAAAACATTAGTGCAAGAGACGCTTCTTTTTAAATCACAGGA GCTTAATGCATTGAAGAAGGAGCATTCAAAGTTACAAGAGAGGAGCATGGCTTTAGCCAAAGAACTTGCAGCACTTAAACTGGTGTCAGACCTGAACATG GACGAAGATGAGATTTTGAAACTTGCTTCGTTTGGTAATGAGGTTAATGCTAAACATACTATCGACATTCTCCGGAAGTCCCTGGCTACTCGGAACAAGA GCTACCAAGAGTTAATGGCCAAGTGCATCCAGCTTGGAAGAGGAGAGGCTCGTTCTACTAGAAAACTAGAGAAGGCTAAAGACAAGATAACTAGGTTGAA ATCTAGGATTCAGGAAGTGGAGATGGCTGTTGAACTAAAGGAGAATCAAGCTTTAAGGCTCTTAAAGACTTCAAACGAGACAAATTCAAGAAACAAGGTT TCTGGTGAACTTGATGACAAATCTTGTACACCAACTTCTGATCTTTTTCAATCTAGAACTGAAATGAGAAACGCATCATCTCCATCTCTGGATTGCTTGG CTGAAACTCAGAACTTGGGTGGTAACGCAAACAAAGGAAGACATTTTTCCAACAATAAAGCTGGTGCAAATTTTTCAAGCAGGCCTTTAGGTGATCTGTC GTCTGATAAAAGGATAAACAATTGCATTATCATTGATGAGGATGCTTTACCAAGTTCTCCAGCTCTATCAGTACATCGAAATCTTGATTTGAAACATACA GCTGGGAAACAAGAAACTAAAGTGAATTCACACGACAAGGCAGGAACTGACTCAGTTCCTTTTATTATAATCAATGAGGATAAAGACTGCACAAACTTAG CTAATGGAGTTGAGGAAGCCTCTGTTTCTTTGGGTCACAAGAACGAAGTCTGCCCCACGATCAACATTAGAAAGGAGTGCTCATCTTCAGTTTCATCTTC AAAACCAGATATCTGTTTCTCAAGCGGATTACTGGGCCCTGATGGAACAACTCGGTATCTGGGGAGGTGGTGTAAACGTGTTCCAAGCAAGGACCCAGAT GCCGTGCAGAGCACAAGTACAAACAACAGGGACTTGATTGCTGTTGGAGCTGATGGAAGGGGTGGCAGAGTTAAAGTCTTAAGGCCTCTGAATCAAGCCC TCATGGGTGGTTCAGAGAACTCCATGCCGGCGAAGAAGTGCAAAATAGGAGTAAAAACAAGTAGTGCCCAGTCTCAAGGATGTTTGCAGATCGAACATTT CTTTGGGAAGTCCAAGCAGTAG
AA sequence Show only first row Show all	>Lus10018817 pacid=23144738 polypeptide=Lus10018817 locus=Lus10018817.g ID=Lus10018817.BGIv1.0 annot-version=v1.0 MSNSFTKTICSICYEDLKPIVEDLQVISICGHVLHELCLQQWFEYCPGKKKYSCPVCKQRCQVSDVARLYFQSLGDSAVSQCQEKVLDPELLDGEIRRLE GKVSGLTSTVDIQDKEIKRLNGEVHLFGFLFQLYDCKEQLKAELVLKNEVVQQKTLVQETLLFKSQELNALKKEHSKLQERSMALAKELAALKLVSDLNM DEDEILKLASFGNEVNAKHTIDILRKSLATRNKSYQELMAKCIQLGRGEARSTRKLEKAKDKITRLKSRIQEVEMAVELKENQALRLLKTSNETNSRNKV SGELDDKSCTPTSDLFQSRTEMRNASSPSLDCLAETQNLGGNANKGRHFSNNKAGANFSSRPLGDLSSDKRINNCIIIDEDALPSSPALSVHRNLDLKHT AGKQETKVNSHDKAGTDSVPFIIINEDKDCTNLANGVEEASVSLGHKNEVCPTINIRKECSSSVSSSKPDICFSSGLLGPDGTTRYLGRWCKRVPSKDPD AVQSTSTNNRDLIAVGADGRGGRVKVLRPLNQALMGGSENSMPAKKCKIGVKTSSAQSQGCLQIEHFFGKSKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	0	1
AT1G61000			unknown protein		Lus10020820 [exp]	1.4	0.9444
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	1.4	0.9508
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	3.9	0.9434
AT5G65120			unknown protein		Lus10016802 [exp]	4.5	0.9309
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	5.0	0.9383
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	6.0	0.9386
AT3G27360			Histone superfamily protein (....		Lus10031821 [exp]	6.0	0.9378
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	6.5	0.9362
AT1G75150			unknown protein		Lus10010814 [exp]	9.8	0.9308
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	9.9	0.9285

Compare expression of checked genes

Lus10018817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.