Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01500 266 / 1e-87 Erythronate-4-phosphate dehydrogenase family protein (.1) AT1G19400 167 / 2e-49 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G75180 162 / 3e-47 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT5G04790 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005124 [exp] 384 / 2e-134 AT1G01500 360 / 3e-125 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10007912 [exp] 319 / 2e-108 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10036394 [exp] 272 / 1e-90 AT1G01500 295 / 4e-100 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10016311 [exp] 145 / 1e-40 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10010803 [exp] 143 / 4e-40 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10042323 [exp] 112 / 2e-28 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10026339 [exp] 111 / 3e-28 AT1G19400 234 / 6e-76 Erythronate-4-phosphate dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089600 [exp] 265 / 2e-87 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G163300 [exp] 261 / 9e-86 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G260900 [exp] 169 / 4e-50 AT1G75180 348 / 2e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.009G115800 [exp] 164 / 3e-48 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018819 pacid=23144666 polypeptide=Lus10018819 locus=Lus10018819.g ID=Lus10018819.BGIv1.0 annot-version=v1.0 ATGTTTCTCATCGCCTCCTTCCCACTTCCTTCCTTCTCCTTCGAATCTGAGGCCGCCTACAGATGGGTCTGCAGCAGCAGCAGGAACAGGAACCCAATCC CTACACCGTCATCTCCACCTCCTCCTCATCCTCCCTCGAAATCCGCCTCTTCTACGTCCGAATCTCCCCTTGCGTCGTCGACACCGTCCCCGACCACCTC ATCCTCCGCCATCTCCGCCGCCACACCAGCTCCGCTCTCGAGATCAACGGCTCACGGATCCCCGCCGTCGATTCCCCCTCTGTCACCCTCCGCCGGGACC GCCTTCAGCCGGGACCGCCTTGACAAGGAGTCCTCCGAGGTCACCTACGTTAGCACCGACAGCGTCCGCGTCACCGGAGCGCTTGAATTCGAGGTCCTCG AGAACTCCGATTTGCTCCTCTGCGGATCCTTCGAGAGGATGGAGTCCGCTTGGGGGAACGATTCTAGGACCGGCTGGAGTATGGAGTGTTACGTCGCCGC GTCTGTCGGGGAAGGGATCTCTCCCTTCTTCCAGCCGGGGAAAGGGGTGTCGGCTCCGGCCATTGAGGTTTATATCGCCGGCTGCTGCGGCGGGGTTCCC GTGATATTGACAAAGACGATTATGGTCAGCCCGAGGAAGAAGGTTTCCAAGCTTGCCACGCTGGATGCGATTCCGGAAGATGAAGAGCTGGAGAAGGAAG AAGAGCAGGAGAAGCACCTCAATGACGGTAGTAAAAGTGCTTTGTCGCCTCGCCTCCTCCAAATTCCGAGTAGTGAATCGGAAGATGATGAGTATGATGC GGAGATCAAACCTGGGATGAGATACTACTCTGAAGACATGTATTACGGTGAGGATGGGCAGCTCTCTTGGTTCAATGCCGGTGTTAGAGTTGGTGTGGGG ATCGGCCTTGGTATGTGTGTAGGGGTAGGAATCGGGGTTGGACTTCTCATGCGCTCATATCAAGCAACTACCACCAACCTGAGGCGGAGATTCTTATAA
AA sequence Show only first row Show all	>Lus10018819 pacid=23144666 polypeptide=Lus10018819 locus=Lus10018819.g ID=Lus10018819.BGIv1.0 annot-version=v1.0 MFLIASFPLPSFSFESEAAYRWVCSSSRNRNPIPTPSSPPPPHPPSKSASSTSESPLASSTPSPTTSSSAISAATPAPLSRSTAHGSPPSIPPLSPSAGT AFSRDRLDKESSEVTYVSTDSVRVTGALEFEVLENSDLLLCGSFERMESAWGNDSRTGWSMECYVAASVGEGISPFFQPGKGVSAPAIEVYIAGCCGGVP VILTKTIMVSPRKKVSKLATLDAIPEDEELEKEEEQEKHLNDGSKSALSPRLLQIPSSESEDDEYDAEIKPGMRYYSEDMYYGEDGQLSWFNAGVRVGVG IGLGMCVGVGIGVGLLMRSYQATTTNLRRRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	0	1
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	3.6	0.8253
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	4.0	0.8191
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007317 [exp]	4.9	0.8187
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10016307 [exp]	5.2	0.7840
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029267 [exp]	12.0	0.7944
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	13.4	0.7981
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	13.7	0.7936
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	16.0	0.7972
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	17.8	0.7212
AT1G75800			Pathogenesis-related thaumatin...		Lus10013560 [exp]	18.7	0.7435

Compare expression of checked genes

Lus10018819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.