Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01320 686 / 0 ATSTE24 Peptidase family M48 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005123 [exp] 748 / 0 AT4G01320 675 / 0.0 Peptidase family M48 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088900 [exp] 703 / 0 AT4G01320 757 / 0.0 Peptidase family M48 family protein (.1) Potri.002G162700 [exp] 703 / 0 AT4G01320 744 / 0.0 Peptidase family M48 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01435 [flax] [poplar] Peptidase_M48 Peptidase family M48
Representative CDS sequence Show only first row Show all	>Lus10018820 pacid=23144763 polypeptide=Lus10018820 locus=Lus10018820.g ID=Lus10018820.BGIv1.0 annot-version=v1.0 ATGGCGTTCCCTTTCTTGGAACTCGTCGTAGGTTTTATGATAGTGATGTACATCTTTGAAACATATCTTGATCTTCGTCAACTTGCTGCCTACAAGCTCC TTACCTTACCAAGACCTTTAAAAGGAGTCATTAGCCAGGAGAAGTTTGAGAAATCTCGAGCATATAGCCTTGATAAAAGCTACTATGGTTTTGTTCACGA CTTTGTGAGTATTGTGTTGGACTCGGCCATTTTATGGTATGGTGTACTGCCTTGGGTTTGGAAGAAATCGGAGATCTTTCTGGTCTCTGTTGGACTTAAT GCAGAGAATGAAATAATCCTTACTCTTGCCTTTTTGGGCAGTATGATGATGTGGTCACAGATCACTGATTTGCCATTTTCCCTATACTCAACATTTGTGA TCGAAGCACGTCATGGTTTTAACAAACAAACAATATGGATGTTCATTAAGGACTTGGTCAAGGGCATCCTGCTCGCTGTCATACTTGGTCCACCTATTGT TGCTGCAATAATCTTCATTGTGCAGAAAGGAGGTCCATACTTGGCCATATATCTTTGGGCCTTCATGTTTGTACTCTCTCTTGTGATGATGACAATCTAT CCAGTGTTAATCGCTCCACTGTTCAACAAGTTCACCCCTCTTCCAGAAGGAAACCTCAGGGAGAAAATCGAGAAACTTGCTGCATCTCTCAAGTTCCCTT TAAAGAAGTTGTTTGTTGTAGACGGTTCCACAAGATCCAGCCACAGCAATGCTTACATGTATGGCTTCTTCAAGAACAAGCGGATTGTCCTCTATGACAC ATTGATTCAGCAGGCAAGACCTTACTATACCTGCTACCCTTTGCAGTGCAAAGATGACGAGGAAATTGTAGCTGTTATTGCCCACGAACTGGGGCATTGG AAACTTAATCATACAATGTACACATTCATAGCAATGCAGATTCTTACTTTCCTGCAATTTGGAGGGTACACCCTTGTGAGGAATTCATCTGATCTGTTTA GAAGTTTTGGGTTTGATTCTCAGCCAGTACTCATCGGGTTGATCATATTTCAGCATATTATAATACCATTCCAGCATCTAGTGAACTTTGGGCTTAATCT CATTAGCAGATCTTTTGAATTTCAGGCTGATGCGTTTGCTAAGAAGCTTGGGTATGCTGTTCCTCTTCGTGCTGGGCTAGTGAAACTCCAGGAAGAGAAT CTGTCAGCTATGAACACGGATCCATGGTACTCGGCATATCACTACTCTCATCCTCCTCTGGTTGAAAGGCTGTCAGCACTTGATGAAGTGGAGGGTAAAA AGGATGAGTAA
AA sequence Show only first row Show all	>Lus10018820 pacid=23144763 polypeptide=Lus10018820 locus=Lus10018820.g ID=Lus10018820.BGIv1.0 annot-version=v1.0 MAFPFLELVVGFMIVMYIFETYLDLRQLAAYKLLTLPRPLKGVISQEKFEKSRAYSLDKSYYGFVHDFVSIVLDSAILWYGVLPWVWKKSEIFLVSVGLN AENEIILTLAFLGSMMMWSQITDLPFSLYSTFVIEARHGFNKQTIWMFIKDLVKGILLAVILGPPIVAAIIFIVQKGGPYLAIYLWAFMFVLSLVMMTIY PVLIAPLFNKFTPLPEGNLREKIEKLAASLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQARPYYTCYPLQCKDDEEIVAVIAHELGHW KLNHTMYTFIAMQILTFLQFGGYTLVRNSSDLFRSFGFDSQPVLIGLIIFQHIIIPFQHLVNFGLNLISRSFEFQADAFAKKLGYAVPLRAGLVKLQEEN LSAMNTDPWYSAYHYSHPPLVERLSALDEVEGKKDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10018820 [exp]	0	1
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10032635 [exp]	2.8	0.9095
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	3.5	0.9221
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10014830 [exp]	6.7	0.9064
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	7.3	0.9286
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	10.4	0.8991
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	13.4	0.9162
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	21.8	0.8890
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037963 [exp]	21.9	0.8509
AT2G05710		ACO3	aconitase 3 (.1)		Lus10040070 [exp]	22.2	0.8818
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	27.3	0.8863

Compare expression of checked genes

Lus10018820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.